Excess of non-conservative amino acid changes in marine bacterioplankton lineages with reduced genomes

Correlation between genome reduction and bacterial growth

(2016) Masaomi Kurokawa et al.   DNA RESEARCH

Indispensability of Horizontally Transferred Genes and Its Impact on Bacterial Genome Streamlining

(2016) Ildikó Karcagi et al.   MOLECULAR BIOLOGY AND EVOLUTION

Losing Complexity: The Role of Simplification in Macroevolution

(2016) Maureen A. O’Malley et al.   TRENDS IN ECOLOGY & EVOLUTION

Endosymbiont evolution: predictions from theory and surprises from genomes

(2015) Jennifer J. Wernegreen   Annals of the New York Academy of Sciences

Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation–Accumulation Experiments

(2015) Way Sung et al.   MOLECULAR BIOLOGY AND EVOLUTION

Background Mutational Features of the Radiation-Resistant BacteriumDeinococcus radiodurans

(2015) Hongan Long et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure and function of the global ocean microbiome

(2015) S. Sunagawa et al.   SCIENCE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

A Neoproterozoic Transition in the Marine Nitrogen Cycle

(2014) Patricia Sánchez-Baracaldo et al.   CURRENT BIOLOGY

Evolutionary analysis of a streamlined lineage of surface ocean Roseobacters

(2014) Haiwei Luo et al.   ISME Journal

Evolutionary origin of a streamlined marine bacterioplankton lineage

(2014) Haiwei Luo   ISME Journal

Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype

(2014) J Cameron Thrash et al.   ISME Journal

Implications of streamlining theory for microbial ecology

(2014) Stephen J Giovannoni et al.   ISME Journal

Reductive genome evolution at both ends of the bacterial population size spectrum

(2014) Bérénice Batut et al.   NATURE REVIEWS MICROBIOLOGY

Prochlorococcus: the structure and function of collective diversity

(2014) Steven J. Biller et al.   NATURE REVIEWS MICROBIOLOGY

Single-Cell Genomics Reveals Hundreds of Coexisting Subpopulations in Wild Prochlorococcus

(2014) N. Kashtan et al.   SCIENCE

tRNA Signatures Reveal a Polyphyletic Origin of SAR11 Strains among Alphaproteobacteria

(2014) Katherine C. H. Amrine et al.   PLoS Computational Biology

Genomes of diverse isolates of the marine cyanobacterium Prochlorococcus

(2014) Steven J. Biller et al.   Scientific Data

Processes and patterns of oceanic nutrient limitation

(2013) C. M. Moore et al.   Nature Geoscience

Comparative and Phylogenomic Evidence That the Alphaproteobacterium HIMB59 Is Not a Member of the Oceanic SAR11 Clade

(2013) Johan Viklund et al.   PLoS One

Prevalent genome streamlining and latitudinal divergence of planktonic bacteria in the surface ocean

(2013) B. K. Swan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparing effective population sizes of dominant marine alphaproteobacteria lineages

(2013) Haiwei Luo et al.   Environmental Microbiology Reports

Single-cell genomics reveal low recombination frequencies in freshwater bacteria of the SAR11 clade

(2013) Katarzyna Zaremba-Niedzwiedzka et al.   GENOME BIOLOGY

The SAR11 Group of Alpha-Proteobacteria Is Not Related to the Origin of Mitochondria

(2012) Naiara Rodríguez-Ezpeleta et al.   PLoS One

Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing

(2012) H. Lee et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

The significance of nitrogen cost minimization in proteomes of marine microorganisms

(2011) Joseph J Grzymski et al.   ISME Journal

Independent Genome Reduction and Phylogenetic Reclassification of the Oceanic SAR11 Clade

(2011) J. Viklund et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome Reduction by Deletion of Paralogs in the Marine Cyanobacterium Prochlorococcus

(2011) H. Luo et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reduced Selective Constraint in Endosymbionts: Elevation in Radical Amino Acid Replacements Occurs Genome-Wide

(2011) Jennifer J. Wernegreen   PLoS One

The spontaneous mutation frequencies of Prochlorococcus strains are commensurate with those of other bacteria

(2011) Marcia S. Osburne et al.   Environmental Microbiology Reports

Distinct, ecotype-specific genome and proteome signatures in the marine cyanobacteria Prochlorococcus

(2010) Sandip Paul et al.   BMC GENOMICS

Prochlorococcus: Advantages and Limits of Minimalism

(2009) Frédéric Partensky et al.   Annual Review of Marine Science

More radical amino acid replacements in primates than in rodents: Support for the evolutionary role of effective population size

(2009) Austin L. Hughes et al.   GENE

Effective population size and patterns of molecular evolution and variation

(2009) Brian Charlesworth   NATURE REVIEWS GENETICS