Normal milk microbiome is reestablished following experimental infection with Escherichia coli independent of intramammary antibiotic treatment with a third-generation cephalosporin in bovines

The bovine colostrum microbiome and its association with clinical mastitis

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Metagenomic Evidence of the Prevalence and Distribution Patterns of Antimicrobial Resistance Genes in Dairy Agroecosystems

(2016) Dipti W. Pitta et al.   Foodborne Pathogens and Disease

Metabolic profile modifications in milk after enrofloxacin administration studied by liquid chromatography coupled with high resolution mass spectrometry

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Exploring the evidence base for national and regional policy interventions to combat resistance

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The bovine milk microbiota: insights and perspectives from -omics studies

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Systematic Review of the Human Milk Microbiota

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Genetic diversity, the virulence gene profile and antimicrobial resistance of clinical mastitis-associated Escherichia coli

(2016) Orla M. Keane   RESEARCH IN MICROBIOLOGY

Impact of the administration of a third-generation cephalosporin (3GC) to one-day-old chicks on the persistence of 3GC-resistant Escherichia coli in intestinal flora: An in vivo experiment

(2016) Sandrine Baron et al.   VETERINARY MICROBIOLOGY

Relationship between Milk Microbiota, Bacterial Load, Macronutrients, and Human Cells during Lactation

(2016) Alba Boix-Amorós et al.   Frontiers in Microbiology

Bovine Teat Microbiome Analysis Revealed Reduced Alpha Diversity and Significant Changes in Taxonomic Profiles in Quarters with a History of Mastitis

(2016) Hélène Falentin et al.   Frontiers in Microbiology

Impact of Timing and Dosage of a Fluoroquinolone Treatment on the Microbiological, Pathological, and Clinical Outcomes of Calves Challenged with Mannheimia haemolytica

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The structure and diversity of human, animal and environmental resistomes

(2016) Chandan Pal et al.   Microbiome

Evaluation of an On-Farm Culture System (Accumast) for Fast Identification of Milk Pathogens Associated with Clinical Mastitis in Dairy Cows

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Longitudinal metagenomic profiling of bovine milk to assess the impact of intramammary treatment using a third-generation cephalosporin

(2016) Erika K. Ganda et al.   Scientific Reports

Impact of subclinical and clinical mastitis on sensitivity to pain of dairy cows

(2015) M. D. P. Peters et al.   Animal

Impact of Ceftiofur Injection on Gut Microbiota and Escherichia coli Resistance in Pigs

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Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Flow cytometric analysis: Interdependence of healthy and infected udder quarters

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Behavioral changes in freestall-housed dairy cows with naturally occurring clinical mastitis

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The cost of clinical mastitis in the first 30 days of lactation: An economic modeling tool

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Same Exposure but Two Radically Different Responses to Antibiotics: Resilience of the Salivary Microbiome versus Long-Term Microbial Shifts in Feces

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Genome Based Phylogeny and Comparative Genomic Analysis of Intra-Mammary Pathogenic Escherichia coli

(2015) Vincent P. Richards et al.   PLoS One

Metagenomic Analysis of Antibiotic Resistance Genes in Dairy Cow Feces following Therapeutic Administration of Third Generation Cephalosporin

(2015) Lindsey Chambers et al.   PLoS One

Oral Administration of Faecalibacterium prausnitzii Decreased the Incidence of Severe Diarrhea and Related Mortality Rate and Increased Weight Gain in Preweaned Dairy Heifers

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Microbiota of Cow’s Milk; Distinguishing Healthy, Sub-Clinically and Clinically Diseased Quarters

(2014) Georgios Oikonomou et al.   PLoS One

Antibiotic-induced shifts in the mouse gut microbiome and metabolome increase susceptibility to Clostridium difficile infection

(2014) Casey M. Theriot et al.   Nature Communications

Effect of chemotherapy on the microbiota and metabolome of human milk, a case report

(2014) Camilla Urbaniak et al.   Microbiome

Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters

(2013) Kirsty Jensen et al.   BMC GENOMICS

One world, one health

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Prednisolone and cefapirin act synergistically in resolving experimental Escherichia coli mastitis

(2013) Anja Sipka et al.   JOURNAL OF DAIRY SCIENCE

Treatment for bovineEscherichia colimastitis - an evidence-based approach

(2013) L. Suojala et al.   JOURNAL OF VETERINARY PHARMACOLOGY AND THERAPEUTICS

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

The human milk microbiome changes over lactation and is shaped by maternal weight and mode of delivery

(2012) Raul Cabrera-Rubio et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

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A comparison of methods used to extract bacterial DNA from raw milk and raw milk cheese

(2012) L. Quigley et al.   JOURNAL OF APPLIED MICROBIOLOGY

Milk microbiome signatures of subclinical mastitis-affected cattle analysed by shotgun sequencing

(2012) V.D. Bhatt et al.   JOURNAL OF APPLIED MICROBIOLOGY

Behavioral changes in dairy cows with mastitis

(2012) C. Medrano-Galarza et al.   JOURNAL OF DAIRY SCIENCE

Quality-filtering vastly improves diversity estimates from Illumina amplicon sequencing

(2012) Nicholas A Bokulich et al.   NATURE METHODS

The human milk microbiota: Origin and potential roles in health and disease

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Microbial Diversity of Bovine Mastitic Milk as Described by Pyrosequencing of Metagenomic 16s rDNA

(2012) Georgios Oikonomou et al.   PLoS One

Phylogroup and lpfA influence epithelial invasion by mastitis associated Escherichia coli

(2012) Belgin Dogan et al.   VETERINARY MICROBIOLOGY

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Randomized clinical trial to evaluate the efficacy of a 5-day ceftiofur hydrochloride intramammary treatment on nonsevere gram-negative clinical mastitis

(2011) Y.H. Schukken et al.   JOURNAL OF DAIRY SCIENCE

Bovine intramammary Escherichia coli challenge infections in late gestation demonstrate a dominant antiinflammatory immunological response

(2011) R.R. Quesnell et al.   JOURNAL OF DAIRY SCIENCE

Costs of clinical mastitis with special reference to premature culling

(2011) A.-M. Heikkilä et al.   JOURNAL OF DAIRY SCIENCE

Characterization of the Diversity and Temporal Stability of Bacterial Communities in Human Milk

(2011) Katherine M. Hunt et al.   PLoS One

Host-response patterns of intramammary infections in dairy cows

(2011) Ynte H. Schukken et al.   VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Effects of repeated gram-positive and gram-negative clinical mastitis episodes on milk yield loss in Holstein dairy cows

(2009) Y.H. Schukken et al.   JOURNAL OF DAIRY SCIENCE

Effects of Repeated Episodes of Generic Clinical Mastitis on Mortality and Culling in Dairy Cows

(2008) D. Bar et al.   JOURNAL OF DAIRY SCIENCE