High-precision registration between zebrafish brain atlases using symmetric diffeomorphic normalization

Whole-brain activity mapping onto a zebrafish brain atlas

(2015) Owen Randlett et al.   NATURE METHODS

Labeling of active neural circuits in vivo with designed calcium integrators

(2015) B. F. Fosque et al.   SCIENCE

Direct activation of the Mauthner cell by electric field pulses drives ultrarapid escape responses

(2014) Kathryn M. Tabor et al.   JOURNAL OF NEUROPHYSIOLOGY

Whole-Brain Activity Maps Reveal Stereotyped, Distributed Networks for Visuomotor Behavior

(2014) Ruben Portugues et al.   NEURON

Transgenic tools to characterize neuronal properties of discrete populations of zebrafish neurons

(2013) C. Satou et al.   DEVELOPMENT

The Dorsal Raphe Modulates Sensory Responsiveness during Arousal in Zebrafish

(2012) T. Yokogawa et al.   JOURNAL OF NEUROSCIENCE

Generation of Multiple Classes of V0 Neurons in Zebrafish Spinal Cord: Progenitor Heterogeneity and Temporal Control of Neuronal Diversity

(2012) C. Satou et al.   JOURNAL OF NEUROSCIENCE

ViBE-Z: a framework for 3D virtual colocalization analysis in zebrafish larval brains

(2012) Olaf Ronneberger et al.   NATURE METHODS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Transgenic zebrafish expressing green fluorescent protein in dopaminergic neurons of the ventral diencephalon

(2011) Yanwei Xi et al.   DEVELOPMENTAL DYNAMICS

Evaluation of Registration Methods on Thoracic CT: The EMPIRE10 Challenge

(2011) K. Murphy et al.   IEEE TRANSACTIONS ON MEDICAL IMAGING

Image Similarity and Tissue Overlaps as Surrogates for Image Registration Accuracy: Widely Used but Unreliable

(2011) T. Rohlfing   IEEE TRANSACTIONS ON MEDICAL IMAGING

One for All—A Highly Efficient and Versatile Method for Fluorescent Immunostaining in Fish Embryos

(2011) Daigo Inoue et al.   PLoS One

A structural and functional ground plan for neurons in the hindbrain of zebrafish

(2011) A. Kinkhabwala et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A reproducible evaluation of ANTs similarity metric performance in brain image registration

(2010) Brian B. Avants et al.   NEUROIMAGE

Anatomy of zebrafish cerebellum and screen for mutations affecting its development

(2009) Young-Ki Bae et al.   DEVELOPMENTAL BIOLOGY

Unidirectional startle responses and disrupted left-right co-ordination of motor behaviors inrobo3mutant zebrafish

(2009) H. A. Burgess et al.   GENES BRAIN AND BEHAVIOR

Evaluation of 14 nonlinear deformation algorithms applied to human brain MRI registration

(2009) Arno Klein et al.   NEUROIMAGE

Pathfinding in a large vertebrate axon tract: isotypic interactions guide retinotectal axons at multiple choice points

(2008) A. J. Pittman et al.   DEVELOPMENT

Axonal projections originating from raphe serotonergic neurons in the developing and adult zebrafish,Danio rerio, using transgenics to visualize raphe-specificpet1expression

(2008) Christina Lillesaar et al.   JOURNAL OF COMPARATIVE NEUROLOGY

Visualization of monoaminergic neurons and neurotoxicity of MPTP in live transgenic zebrafish

(2007) Lu Wen et al.   DEVELOPMENTAL BIOLOGY

Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain

(2007) B AVANTS et al.   MEDICAL IMAGE ANALYSIS