De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
De novo genome assembly and annotation of Australia's largest freshwater fish, the Murray cod (Maccullochella peelii), from Illumina and Nanopore sequencing read
Authors
Keywords
-
Journal
GigaScience
Volume 6, Issue 8, Pages 1-6
Publisher
Oxford University Press (OUP)
Online
2017-07-19
DOI
10.1093/gigascience/gix063
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Severe consequences of habitat fragmentation on genetic diversity of an endangered Australian freshwater fish: A call for assisted gene flow
- (2017) Alexandra Pavlova et al. Evolutionary Applications
- Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation
- (2017) Sergey Koren et al. GENOME RESEARCH
- Purifying selection and genetic drift shaped Pleistocene evolution of the mitochondrial genome in an endangered Australian freshwater fish
- (2017) A Pavlova et al. HEREDITY
- Genome-wide SNPs resolve a key conflict between sequence and allozyme data to confirm another threatened candidate species of river blackfishes (Teleostei: Percichthyidae: Gadopsis )
- (2017) Peter J. Unmack et al. MOLECULAR PHYLOGENETICS AND EVOLUTION
- Improvements in Genomic Technologies: Application to Crop Genomics
- (2017) Yuxuan Yuan et al. TRENDS IN BIOTECHNOLOGY
- Scaffolding and completing genome assemblies in real-time with nanopore sequencing
- (2017) Minh Duc Cao et al. Nature Communications
- Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences
- (2016) Heng Li BIOINFORMATICS
- Range-wide fragmentation in a threatened fish associated with post-European settlement modification in the Murray–Darling Basin, Australia
- (2016) Theresa L. Cole et al. CONSERVATION GENETICS
- Species distributions represent intraspecific genetic diversity of freshwater fish in conservation assessments
- (2016) Virgilio Hermoso et al. FRESHWATER BIOLOGY
- Identifying environmental correlates of intraspecific genetic variation
- (2016) K A Harrisson et al. HEREDITY
- Pleistocene divergence across a mountain range and the influence of selection on mitogenome evolution in threatened Australian freshwater cod species
- (2016) K Harrisson et al. HEREDITY
- Genome sequence of the olive tree, Olea europaea
- (2016) Fernando Cruz et al. GigaScience
- Oxford Nanopore MinION Sequencing and Genome Assembly
- (2016) Hengyun Lu et al. GENOMICS PROTEOMICS & BIOINFORMATICS
- Genome assembly using Nanopore-guided long and error-free DNA reads
- (2015) Mohammed-Amin Madoui et al. BMC GENOMICS
- Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies
- (2015) Christophe Plomion et al. Molecular Ecology Resources
- The Dfam database of repetitive DNA families
- (2015) Robert Hubley et al. NUCLEIC ACIDS RESEARCH
- The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization
- (2015) Yi-Jyun Luo et al. Nature Communications
- Scaffolding of a bacterial genome using MinION nanopore sequencing
- (2015) E. Karlsson et al. Scientific Reports
- A single chromosome assembly of Bacteroides fragilis strain BE1 from Illumina and MinION nanopore sequencing data
- (2015) Judith Risse et al. GigaScience
- LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads
- (2015) René L. Warren et al. GigaScience
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- InterProScan 5: genome-scale protein function classification
- (2014) P. Jones et al. BIOINFORMATICS
- SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information
- (2014) Marten Boetzer et al. BMC BIOINFORMATICS
- Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads
- (2014) Rei Kajitani et al. GENOME RESEARCH
- The complete mitogenome of the Murray Cod,Maccullochella peelii(Mitchell, 1838) (Teleostei: Percichthyidae)
- (2014) Christopher M. Austin et al. Mitochondrial DNA
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- New and continuing developments at PROSITE
- (2012) Christian J. A. Sigrist et al. NUCLEIC ACIDS RESEARCH
- TIGRFAMs and Genome Properties in 2013
- (2012) Daniel H. Haft et al. NUCLEIC ACIDS RESEARCH
- PANTHER in 2013: modeling the evolution of gene function, and other gene attributes, in the context of phylogenetic trees
- (2012) Huaiyu Mi et al. NUCLEIC ACIDS RESEARCH
- A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
- (2011) Guillaume Marçais et al. BIOINFORMATICS
- MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects
- (2011) Carson Holt et al. BMC BIOINFORMATICS
- Full-length transcriptome assembly from RNA-Seq data without a reference genome
- (2011) Manfred G Grabherr et al. NATURE BIOTECHNOLOGY
- SMART 7: recent updates to the protein domain annotation resource
- (2011) I. Letunic et al. NUCLEIC ACIDS RESEARCH
- The Pfam protein families database
- (2011) M. Punta et al. NUCLEIC ACIDS RESEARCH
- Quantitative measures for the management and comparison of annotated genomes
- (2009) Karen Eilbeck et al. BMC BIOINFORMATICS
Publish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn MoreCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now