De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
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Title
De novo genome assembly of Camptotheca acuminata, a natural source of the anti-cancer compound camptothecin
Authors
Keywords
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Journal
GigaScience
Volume 6, Issue 9, Pages 1-7
Publisher
Oxford University Press (OUP)
Online
2017-07-24
DOI
10.1093/gigascience/gix065
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- (2013) Hans-Wilhelm Nützmann et al. CURRENT OPINION IN BIOTECHNOLOGY
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- (2013) Daehwan Kim et al. GENOME BIOLOGY
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- (2012) Elsa Góngora-Castillo et al. PLoS One
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- (2012) D. DellaPenna et al. SCIENCE
- SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
- (2012) Ruibang Luo et al. GigaScience
- Pyrosequencing of the Camptotheca acuminata transcriptome reveals putative genes involved in camptothecin biosynthesis and transport
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- (2010) Y. Han et al. NUCLEIC ACIDS RESEARCH
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- (2009) BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
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- (2008) Daniel J. Kliebenstein PLoS One
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