Herbicide injury induces DNA methylome alterations in Arabidopsis

Changes in expression of miRNAs involved in stress responses and senescence in glyphosate-treated maize

(2016) Agata Tyczewska et al.   New Biotechnology

Comparing five statistical methods of differential methylation identification using bisulfite sequencing data

(2016) Xiaoqing Yu et al.   Statistical Applications in Genetics and Molecular Biology

Genome-wide identification of DNA methylation provides insights into the association of gene expression in rice exposed to pesticide atrazine

(2016) Yi Chen Lu et al.   Scientific Reports

A Comparative Analysis of 5-Azacytidine- and Zebularine-Induced DNA Demethylation

(2016) Patrick T. Griffin et al.   G3-Genes Genomes Genetics

Comparing five statistical methods of differential methylation identification using bisulfite sequencing data

(2016) Xiaoqing Yu et al.   Statistical Applications in Genetics and Molecular Biology

Hyperosmotic stress memory in Arabidopsis is mediated by distinct epigenetically labile sites in the genome and is restricted in the male germline by DNA glycosylase activity

(2016) Anjar Wibowo et al.   eLife

Protein kinase GCN2 mediates responses to glyphosate in Arabidopsis

(2015) Isabel Faus et al.   BMC PLANT BIOLOGY

Genetically Modified Herbicide-Tolerant Crops, Weeds, and Herbicides: Overview and Impact

(2015) Sylvie Bonny   ENVIRONMENTAL MANAGEMENT

Methylome analysis reveals an important role for epigenetic changes in the regulation of theArabidopsisresponse to phosphate starvation

(2015) Lenin Yong-Villalobos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Century-scale Methylome Stability in a Recently Diverged Arabidopsis thaliana Lineage

(2015) Jörg Hagmann et al.   PLoS Genetics

Stress induced gene expression drives transient DNA methylation changes at adjacent repetitive elements

(2015) David Secco et al.   eLife

Determination of genetic and epigenetic effects of glyphosate on Triticum aestivum with RAPD and CRED-RA techniques

(2015) Gokce Nardemir et al.   Theoretical and Experimental Plant Physiology

Environmentally responsive genome-wide accumulation of de novoArabidopsis thalianamutations and epimutations

(2014) Caifu Jiang et al.   GENOME RESEARCH

Transposable elements, a treasure trove to decipher epigenetic variation: insights from Arabidopsis and crop epigenomes

(2014) M. Mirouze et al.   JOURNAL OF EXPERIMENTAL BOTANY

Erratum: RNA-directed DNA methylation: an epigenetic pathway of increasing complexity

(2014) Marjori A. Matzke et al.   NATURE REVIEWS GENETICS

Glyphosate resistance: state of knowledge

(2014) Robert Douglas Sammons et al.   PEST MANAGEMENT SCIENCE

An optimized algorithm for detecting and annotating regional differential methylation

(2013) Sheng Li et al.   BMC BIOINFORMATICS

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Comprehensive Analysis of Silencing Mutants Reveals Complex Regulation of the Arabidopsis Methylome

(2013) Hume Stroud et al.   CELL

Evolution and spread of glyphosate resistance inConyza canadensisin California

(2013) Miki Okada et al.   Evolutionary Applications

Single-base resolution maps of cultivated and wild rice methylomes and regulatory roles of DNA methylation in plant gene expression

(2012) Xin Li et al.   BMC GENOMICS

Evolved polygenic herbicide resistance inLolium rigidumby low-dose herbicide selection within standing genetic variation

(2012) Roberto Busi et al.   Evolutionary Applications

Two non-target mechanisms are involved in glyphosate-resistant horseweed (Conyza canadensis L. Cronq.) biotypes

(2012) Fidel González-Torralva et al.   JOURNAL OF PLANT PHYSIOLOGY

Unravelling the genetic bases of non-target-site-based resistance (NTSR) to herbicides: a major challenge for weed science in the forthcoming decade

(2012) Christophe Délye   PEST MANAGEMENT SCIENCE

Salt Stress Induced Variation in DNA Methylation Pattern and Its Influence on Gene Expression in Contrasting Rice Genotypes

(2012) Ratna Karan et al.   PLoS One

Widespread dynamic DNA methylation in response to biotic stress

(2012) R. H. Dowen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions

(2012) Kasper D Hansen et al.   GENOME BIOLOGY

methylKit: a comprehensive R package for the analysis of genome-wide DNA methylation profiles

(2012) Altuna Akalin et al.   GENOME BIOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Susceptibility variation to new and established herbicides: Examples of inter-population sensitivity of grass weeds

(2011) Liv Å. Espeby et al.   CROP PROTECTION

Spontaneous epigenetic variation in the Arabidopsis thaliana methylome

(2011) Claude Becker et al.   NATURE

Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants

(2011) R. J. Schmitz et al.   SCIENCE

Population Variability in the Response of Ripgut Brome (Bromus diandrus) to Sulfosulfuron and Glyphosate Herbicides

(2011) Concepción Escorial et al.   WEED SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Evolution of glyphosate resistance in a Lolium rigidum population by glyphosate selection at sublethal doses

(2009) R Busi et al.   HEREDITY

Stress-induced DNA methylation changes and their heritability in asexual dandelions

(2009) Koen J. F. Verhoeven et al.   NEW PHYTOLOGIST

A composite transcriptional signature differentiates responses towards closely related herbicides in Arabidopsis thaliana and Brassica napus

(2009) Malay Das et al.   PLANT MOLECULAR BIOLOGY

Gene amplification confers glyphosate resistance in Amaranthus palmeri

(2009) T. A. Gaines et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning

(2008) Shawn J. Cokus et al.   NATURE

Glyphosate: a once-in-a-century herbicide

(2008) Stephen O Duke et al.   PEST MANAGEMENT SCIENCE