- Home
- Publications
- Publication Search
- Publication Details
Title
Differential bicodon usage in lowly and highly abundant proteins
Authors
Keywords
-
Journal
PeerJ
Volume 5, Issue -, Pages e3081
Publisher
PeerJ
Online
2017-03-09
DOI
10.7717/peerj.3081
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast
- (2016) Caitlin E. Gamble et al. CELL
- Synonymous Codons Direct Cotranslational Folding toward Different Protein Conformations
- (2016) Florian Buhr et al. MOLECULAR CELL
- Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling
- (2016) Fuad Mohammad et al. Cell Reports
- Genome-Wide and Experimental Resolution of Relative Translation Elongation Speed at Individual Gene Level in Human Cells
- (2016) Xinlei Lian et al. PLoS Genetics
- Decoding mechanisms by which silent codon changes influence protein biogenesis and function
- (2015) Vedrana Bali et al. INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY
- Codon Bias as a Means to Fine-Tune Gene Expression
- (2015) Tessa E.F. Quax et al. MOLECULAR CELL
- Slowing Translation between Protein Domains by Increasing Affinity between mRNAs and the Ribosomal Anti-Shine–Dalgarno Sequence Improves Solubility
- (2015) Kevin A. Vasquez et al. ACS Synthetic Biology
- How Co-translational Folding of Multi-domain Protein Is Affected by Elongation Schedule: Molecular Simulations
- (2015) Tomohiro Tanaka et al. PLoS Computational Biology
- Understanding Biases in Ribosome Profiling Experiments Reveals Signatures of Translation Dynamics in Yeast
- (2015) Jeffrey A. Hussmann et al. PLoS Genetics
- Expanding Anfinsen’s Principle: Contributions of Synonymous Codon Selection to Rational Protein Design
- (2014) Ian M. Sander et al. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
- Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation
- (2014) C. Pop et al. Molecular Systems Biology
- Transcript level and sequence determinants of protein abundance and noise in Escherichia coli
- (2014) Joao C. Guimaraes et al. NUCLEIC ACIDS RESEARCH
- The effect of tRNA levels on decoding times of mRNA codons
- (2014) Alexandra Dana et al. NUCLEIC ACIDS RESEARCH
- Targeting and plasticity of mitochondrial proteins revealed by proximity-specific ribosome profiling
- (2014) C. C. Williams et al. SCIENCE
- Kinetic modelling indicates that fast-translating codons can coordinate cotranslational protein folding by avoiding misfolded intermediates
- (2014) Edward P. O’Brien et al. Nature Communications
- The Effects of Codon Context on In Vivo Translation Speed
- (2014) Fabienne F. V. Chevance et al. PLoS Genetics
- Measurement of average decoding rates of the 61 sense codons in vivo
- (2014) Justin Gardin et al. eLife
- mRNA-programmed translation pauses in the targeting of E. coli membrane proteins
- (2014) Nir Fluman et al. eLife
- Co-translational mechanisms of protein maturation
- (2013) Felix Gloge et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Non-random arrangement of synonymous codons in archaea coding sequences
- (2013) Yan-Mei Zhang et al. GENOMICS
- Universal Pattern and Diverse Strengths of Successive Synonymous Codon Bias in Three Domains of Life, Particularly Among Prokaryotic Genomes
- (2012) F.-B. Guo et al. DNA RESEARCH
- The Relation of Codon Bias to Tissue-Specific Gene Expression in Arabidopsis thaliana
- (2012) S. Camiolo et al. GENETICS
- Silent Substitutions Predictably Alter Translation Elongation Rates and Protein Folding Efficiencies
- (2012) Paige S. Spencer et al. JOURNAL OF MOLECULAR BIOLOGY
- PaxDb, a Database of Protein Abundance Averages Across All Three Domains of Life
- (2012) M. Wang et al. MOLECULAR & CELLULAR PROTEOMICS
- GENETIC CODE REDUNDANCY AND ITS INFLUENCE ON THE ENCODED POLYPEPTIDES
- (2012) Paige S. Spencer et al. Computational and Structural Biotechnology Journal
- Ribosome Profiling of Mouse Embryonic Stem Cells Reveals the Complexity and Dynamics of Mammalian Proteomes
- (2011) Nicholas T. Ingolia et al. CELL
- Understanding the contribution of synonymous mutations to human disease
- (2011) Zuben E. Sauna et al. NATURE REVIEWS GENETICS
- Messenger RNA interactions in the decoding center control the rate of translocation
- (2011) Prashant K Khade et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Codon usage bias and the evolution of influenza A viruses. Codon Usage Biases of Influenza Virus
- (2010) Emily HM Wong et al. BMC EVOLUTIONARY BIOLOGY
- A Role for Codon Order in Translation Dynamics
- (2010) Gina Cannarozzi et al. CELL
- Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line
- (2010) Christine Vogel et al. Molecular Systems Biology
- Translation efficiency in humans: tissue specificity, global optimization and differences between developmental stages
- (2010) Yedael Y. Waldman et al. NUCLEIC ACIDS RESEARCH
- Translation efficiency is determined by both codon bias and folding energy
- (2010) Tamir Tuller et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The combination of ERCC1 and XRCC1 gene polymorphisms better predicts clinical outcome to oxaliplatin-based chemotherapy in metastatic colorectal cancer
- (2009) Jun Liang et al. CANCER CHEMOTHERAPY AND PHARMACOLOGY
- Transient ribosomal attenuation coordinates protein synthesis and co-translational folding
- (2009) Gong Zhang et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Genome-Wide Analysis in Vivo of Translation with Nucleotide Resolution Using Ribosome Profiling
- (2009) N. T. Ingolia et al. SCIENCE
- Selection on Codon Bias
- (2008) Ruth Hershberg et al. Annual Review of Genetics
- Preferred and avoided codon pairs in three domains of life
- (2008) Age Tats et al. BMC GENOMICS
- Most mammalian mRNAs are conserved targets of microRNAs
- (2008) R. C. Friedman et al. GENOME RESEARCH
- Quality control by the ribosome following peptide bond formation
- (2008) Hani S. Zaher et al. NATURE
- Virus Attenuation by Genome-Scale Changes in Codon Pair Bias
- (2008) J. R. Coleman et al. SCIENCE
Add your recorded webinar
Do you already have a recorded webinar? Grow your audience and get more views by easily listing your recording on Peeref.
Upload NowCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now