Successive DNA extractions improve characterization of soil microbial communities
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Title
Successive DNA extractions improve characterization of soil microbial communities
Authors
Keywords
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Journal
PeerJ
Volume 5, Issue -, Pages e2915
Publisher
PeerJ
Online
2017-02-01
DOI
10.7717/peerj.2915
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- (2015) Acacio A. Navarrete et al. MOLECULAR ECOLOGY
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- (2014) Lucas W Mendes et al. ISME Journal
- Belowground biodiversity and ecosystem functioning
- (2014) Richard D. Bardgett et al. NATURE
- Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible
- (2014) Paul J. McMurdie et al. PLoS Computational Biology
- Commercial DNA extraction kits impact observed microbial community composition in permafrost samples
- (2013) Tatiana A. Vishnivetskaya et al. FEMS MICROBIOLOGY ECOLOGY
- Symbiotic relationships between soil fungi and plants reduce N2O emissions from soil
- (2013) S Franz Bender et al. ISME Journal
- phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data
- (2013) Paul J. McMurdie et al. PLoS One
- Impact of Long-Term Diesel Contamination on Soil Microbial Community Structure
- (2012) Nora B. Sutton et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes
- (2012) Elmar Pruesse et al. BIOINFORMATICS
- Snakemake--a scalable bioinformatics workflow engine
- (2012) J. Koster et al. BIOINFORMATICS
- Structure, fluctuation and magnitude of a natural grassland soil metagenome
- (2012) Tom O Delmont et al. ISME Journal
- Comparison of commercial kits for the extraction of DNA from paddy soils
- (2012) S. Knauth et al. LETTERS IN APPLIED MICROBIOLOGY
- The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
- (2012) Christian Quast et al. NUCLEIC ACIDS RESEARCH
- Shifts in phylogenetic diversity of archaeal communities in mangrove sediments at different sites and depths in southeastern Brazil
- (2012) Lucas William Mendes et al. RESEARCH IN MICROBIOLOGY
- Ecogenomics of microbial communities in bioremediation of chlorinated contaminated sites
- (2012) Farai Maphosa et al. Frontiers in Microbiology
- The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
- (2012) Daniel McDonald et al. GigaScience
- Multiple DNA Extractions Coupled with Stable-Isotope Probing of Anthracene-Degrading Bacteria in Contaminated Soil
- (2011) Maiysha D. Jones et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- UCHIME improves sensitivity and speed of chimera detection
- (2011) Robert C. Edgar et al. BIOINFORMATICS
- Removing Noise From Pyrosequenced Amplicons
- (2011) Christopher Quince et al. BMC BIOINFORMATICS
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- (2011) Nathalie Lombard et al. FEMS MICROBIOLOGY ECOLOGY
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- (2011) Eiko E. Kuramae et al. FEMS MICROBIOLOGY ECOLOGY
- Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria
- (2011) R. Mendes et al. SCIENCE
- Effect of DNA Extraction Method on the Apparent Microbial Diversity of Soil
- (2010) O. Inceoglu et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Accessing the Soil Metagenome for Studies of Microbial Diversity
- (2010) Tom O. Delmont et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Examining the global distribution of dominant archaeal populations in soil
- (2010) Scott T Bates et al. ISME Journal
- Dormancy contributes to the maintenance of microbial diversity
- (2010) S. E. Jones et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Assessment of Bias Associated with Incomplete Extraction of Microbial DNA from Soil
- (2009) L. M. Feinstein et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
- (2009) P. D. Schloss et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data
- (2009) Micah Hamady et al. ISME Journal
- Recovery, Purification, and Cloning of High-Molecular-Weight DNA from Soil Microorganisms
- (2008) M. R. Liles et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Analysis of T-RFLP data using analysis of variance and ordination methods: A comparative study
- (2008) S.W. Culman et al. JOURNAL OF MICROBIOLOGICAL METHODS
- The Microbial Engines That Drive Earth's Biogeochemical Cycles
- (2008) P. G. Falkowski et al. SCIENCE
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