A comparative in-silico analysis of autophagy proteins in ciliates

A Tetrahymena Hsp90 co-chaperone promotes siRNA loading by ATP-dependent and ATP-independent mechanisms

(2015) S. L. Woehrer et al.   EMBO JOURNAL

Identification of neutral and acidic deoxyribonuclease activities in Tetrahymena thermophila life stages

(2015) Erhan Aslan et al.   EUROPEAN JOURNAL OF PROTISTOLOGY

Molecular genetic diversity and characterization of conjugation genes in the fish parasite Ichthyophthirius multifiliis

(2015) Elisabeth MacColl et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Autophagy-independent functions of UVRAG are essential for peripheral naive T-cell homeostasis

(2015) Samia Afzal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Autophagy in protists: examples of secondary loss, lineage-specific innovations, and the conundrum of remodeling a single mitochondrion

(2014) Daniel J. Rigden et al.   Autophagy

Evolution of Atg1 function and regulation

(2014) Edmond Y. Chan et al.   Autophagy

Role of class III phosphatidylinositol 3-kinase during programmed nuclear death ofTetrahymena thermophila

(2014) Takahiko Akematsu et al.   Autophagy

A novel mitochondrial nuclease-associated protein: A major executor of the programmed nuclear death inTetrahymena thermophila

(2014) Eriko Osada et al.   BIOLOGY OF THE CELL

The Draft Assembly of the Radically Organized Stylonychia lemnae Macronuclear Genome

(2014) Samuel H. Aeschlimann et al.   Genome Biology and Evolution

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Starvation-response may not involve Atg1-dependent autophagy induction in non-unikont parasites

(2014) László Földvári-Nagy et al.   Scientific Reports

An automated graphics tool for comparative genomics: the Coulson plot generator

(2013) Helen I Field et al.   BMC BIOINFORMATICS

Autophagy and human diseases

(2013) Peidu Jiang et al.   CELL RESEARCH

A current perspective of autophagosome biogenesis

(2013) Shusaku T Shibutani et al.   CELL RESEARCH

The machinery of macroautophagy

(2013) Yuchen Feng et al.   CELL RESEARCH

The Atg8 family: multifunctional ubiquitin-like key regulators of autophagy

(2013) Moran Rawet Slobodkin et al.   Essays in Biochemistry

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The VMP1-Beclin 1 interaction regulates autophagy induction

(2013) Maria I. Molejon et al.   Scientific Reports

The Oxytricha trifallax Macronuclear Genome: A Complex Eukaryotic Genome with 16,000 Tiny Chromosomes

(2013) Estienne C. Swart et al.   PLOS BIOLOGY

Role of ATG8 and Autophagy in Programmed Nuclear Degradation in Tetrahymena thermophila

(2012) Ming-Liang Liu et al.   EUKARYOTIC CELL

Analysis of Autophagy Genes in Microalgae: Chlorella as a Potential Model to Study Mechanism of Autophagy

(2012) Qiao Jiang et al.   PLoS One

Structural Insights into Atg10-Mediated Formation of the Autophagy-Essential Atg12-Atg5 Conjugate

(2012) Masaya Yamaguchi et al.   STRUCTURE

The Role of Atg Proteins in Autophagosome Formation

(2011) Noboru Mizushima et al.   Annual Review of Cell and Developmental Biology

Autophagy in protists

(2011) Michael Duszenko et al.   Autophagy

The Beclin 1 network regulates autophagy and apoptosis

(2011) R Kang et al.   CELL DEATH AND DIFFERENTIATION

Autophagy in parasitic protists: Unique features and drug targets

(2011) Ana Brennand et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Tetrahymena thermophila, a unicellular eukaryote with separate germline and somatic genomes

(2011) Eduardo Orias et al.   RESEARCH IN MICROBIOLOGY

Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

(2011) Robert S Coyne et al.   GENOME BIOLOGY

Gigantic macroautophagy in programmed nuclear death ofTetrahymena thermophila

(2010) Takahiko Akematsu et al.   Autophagy

Role of apoptosis-inducing factor (AIF) in programmed nuclear death during conjugation in Tetrahymena thermophila

(2010) Takahiko Akematsu et al.   BMC CELL BIOLOGY

Gene expression in a paleopolyploid: a transcriptome resource for the ciliate Paramecium tetraurelia

(2010) Olivier Arnaiz et al.   BMC GENOMICS

The Cvt pathway as a model for selective autophagy

(2010) Melinda A. Lynch-Day et al.   FEBS LETTERS

Kinetics Comparisons of Mammalian Atg4 Homologues Indicate Selective Preferences toward Diverse Atg8 Substrates

(2010) Min Li et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Characterization of unusual families of ATG8-like proteins and ATG12 in the protozoan parasiteLeishmania major

(2009) Roderick A.M. Williams et al.   Autophagy

Characterization of the Atg17–Atg29–Atg31 complex specifically required for starvation-induced autophagy in Saccharomyces cerevisiae

(2009) Yukiko Kabeya et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Testing significance relative to a fold-change threshold is a TREAT

(2009) D. J. McCarthy et al.   BIOINFORMATICS

Microarray Analyses of Gene Expression during the Tetrahymena thermophila Life Cycle

(2009) Wei Miao et al.   PLoS One

Kinase-Inactivated ULK Proteins Inhibit Autophagy via Their Conserved C-Terminal Domains Using an Atg13-Independent Mechanism

(2008) E. Y. W. Chan et al.   MOLECULAR AND CELLULAR BIOLOGY

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH