Comparative genomics of the pathogenic ciliate Ichthyophthirius multifiliis, its free-living relatives and a host species provide insights into adoption of a parasitic lifestyle and prospects for disease control

Transcriptional profiling of stage specific gene expression in the parasitic ciliate Ichthyophthirius multifiliis

(2011) Donna M. Cassidy-Hanley et al.   MOLECULAR AND BIOCHEMICAL PARASITOLOGY

The draft genome of the parasitic nematode Trichinella spiralis

(2011) Makedonka Mitreva et al.   NATURE GENETICS

Genome-wide identification and evolution of ATP-binding cassette transporters in the ciliate Tetrahymena thermophila: A case of functional divergence in a multigene family

(2010) Jie Xiong et al.   BMC EVOLUTIONARY BIOLOGY

The hidden duplication past of the plant pathogen Phytophthora and its consequences for infection

(2010) Cindy Martens et al.   BMC GENOMICS

Integrative Genomic Approaches Highlight a Family of Parasite-Specific Kinases that Regulate Host Responses

(2010) Lucia Peixoto et al.   Cell Host & Microbe

Reconstructing the evolutionary history of the centriole from protein components

(2010) M. E. Hodges et al.   JOURNAL OF CELL SCIENCE

Stepwise evolution of the centriole-assembly pathway

(2010) Z. Carvalho-Santos et al.   JOURNAL OF CELL SCIENCE

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

Highly Divergent Mitochondrial ATP Synthase Complexes in Tetrahymena thermophila

(2010) Praveen Balabaskaran Nina et al.   PLOS BIOLOGY

Mitochondrial Evolution and Functions in Malaria Parasites

(2009) Akhil B. Vaidya et al.   Annual Review of Microbiology

Endosymbiotic Bacteria in the Parasitic Ciliate Ichthyophthirius multifiliis

(2009) H. Y. Sun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Calcium-Dependent Signaling and Kinases in Apicomplexan Parasites

(2009) Oliver Billker et al.   Cell Host & Microbe

Bioinformatic Characterization of P-Type ATPases Encoded Within the Fully Sequenced Genomes of 26 Eukaryotes

(2009) Mark D. Thever et al.   JOURNAL OF MEMBRANE BIOLOGY

MEROPS: the peptidase database

(2009) Neil D. Rawlings et al.   NUCLEIC ACIDS RESEARCH

PANTHER version 7: improved phylogenetic trees, orthologs and collaboration with the Gene Ontology Consortium

(2009) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

The Pfam protein families database

(2009) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

The global cysteine peptidase landscape in parasites

(2009) Holly J. Atkinson et al.   TRENDS IN PARASITOLOGY

Aggressive assembly of pyrosequencing reads with mates

(2008) Jason R. Miller et al.   BIOINFORMATICS

Scaffolding and validation of bacterial genome assemblies using optical restriction maps

(2008) N. Nagarajan et al.   BIOINFORMATICS

Novel computational methods for increasing PCR primer design effectiveness in directed sequencing

(2008) Kelvin Li et al.   BMC BIOINFORMATICS

Refined annotation and assembly of the Tetrahymena thermophila genome sequence through EST analysis, comparative genomic hybridization, and targeted gap closure

(2008) Robert S Coyne et al.   BMC GENOMICS

Malarial proteases and host cell egress: an ‘emerging’ cascade

(2008) Michael J. Blackman   CELLULAR MICROBIOLOGY

Improved prediction of malaria degradomes by supervised learning with SVM and profile kernel

(2008) Rui Kuang et al.   GENETICA

ATP Synthase and the Actions of Inhibitors Utilized To Study Its Roles in Human Health, Disease, and Other Scientific Areas

(2008) S. Hong et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Three Members of the LC8/DYNLL Family Are Required for Outer Arm Dynein Motor Function

(2008) Christopher A. Tanner et al.   MOLECULAR BIOLOGY OF THE CELL

The Transporter Classification Database: recent advances

(2008) M. H. Saier et al.   NUCLEIC ACIDS RESEARCH

The V-ATPase in Paramecium: functional specialization by multiple gene isoforms

(2008) Thomas Wassmer et al.   PFLUGERS ARCHIV-EUROPEAN JOURNAL OF PHYSIOLOGY

Twenty-five dyneins inTetrahymena: A re-examination of the multidynein hypothesis

(2008) David E. Wilkes et al.   CELL MOTILITY AND THE CYTOSKELETON

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY

Differential transcription of multiple forms of alpha-2-macroglobulin in carp (Cyprinus carpio) infected with parasites

(2007) Dalia F. Onara et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY