Genome-resolved metagenomics of a bioremediation system for degradation of thiocyanate in mine water containing suspended solid tailings

Thousands of microbial genomes shed light on interconnected biogeochemical processes in an aquifer system

(2016) Karthik Anantharaman et al.   Nature Communications

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics

(2015) Rose S. Kantor et al.   ENVIRONMENTAL MICROBIOLOGY

Characterisation of the complex microbial community associated with the ASTER™ thiocyanate biodegradation system

(2015) Robert J. Huddy et al.   MINERALS ENGINEERING

Evaluation of the ASTERTM process in the presence of suspended solids

(2015) Andries W. van Zyl et al.   MINERALS ENGINEERING

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Anaerobic Bacteria Grow within Candida albicans Biofilms and Induce Biofilm Formation in Suspension Cultures

(2014) Emily P. Fox et al.   CURRENT BIOLOGY

Gene and translation initiation site prediction in metagenomic sequences

(2012) Doug Hyatt et al.   BIOINFORMATICS

IDBA-UD: a de novo assembler for single-cell and metagenomic sequencing data with highly uneven depth

(2012) Y. Peng et al.   BIOINFORMATICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Complete genome sequence of Truepera radiovictrix type strain (RQ-24T)

(2011) Natalia Ivanova et al.   Standards in Genomic Sciences

Polyphasic bacterial community analysis of an aerobic activated sludge removing phenols and thiocyanate from coke plant effluent

(2010) Tamás Felföldi et al.   BIORESOURCE TECHNOLOGY

Anaerobic Metabolism Occurs in the Substratum of Gonococcal Biofilms and May Be Sustained in Part by Nitric Oxide

(2010) M. L. Falsetta et al.   INFECTION AND IMMUNITY

Community-wide analysis of microbial genome sequence signatures

(2009) Gregory J Dick et al.   GENOME BIOLOGY