Impact of Repetitive Elements on the Y Chromosome Formation in Plants

Transcriptome profiling of the floral buds and discovery of genes related to sex-differentiation in the dioecious cucurbit Coccinia grandis (L.) Voigt

(2017) Jatindra Nath Mohanty et al.   GENE

Satellite DNA and Transposable Elements in Seabuckthorn ( Hippophae rhamnoides ), a Dioecious Plant with Small Y and Large X Chromosomes

(2017) Janka Puterova et al.   Genome Biology and Evolution

Y chromosome palindromes and gene conversion

(2017) Beniamino Trombetta et al.   HUMAN GENETICS

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

TAREAN: a computational tool for identification and characterization of satellite DNA from unassembled short reads

(2017) Petr Novák et al.   NUCLEIC ACIDS RESEARCH

G-quadruplex structures within the 3′ UTR of LINE-1 elements stimulate retrotransposition

(2017) Aleksandr B Sahakyan et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

MYB transcription factor gene involved in sex determination inAsparagus officinalis

(2016) Kohji Murase et al.   GENES TO CELLS

Homomorphic ZW chromosomes in a wild strawberry show distinctive recombination heterogeneity but a small sex-determining region

(2016) Jacob A. Tennessen et al.   NEW PHYTOLOGIST

Analysis of transposable elements and organellar DNA in male and female genomes of a species with a huge Y chromosome reveals distinct Y centromeres

(2016) Aretuza Sousa et al.   PLANT JOURNAL

Retrotransposon Proliferation Coincident with the Evolution of Dioecy in Asparagus

(2016) Alex Harkess et al.   G3-Genes Genomes Genetics

Fully automated pipeline for detection of sex linked genes using RNA-Seq data

(2015) Monika Michalovova et al.   BMC BIOINFORMATICS

Silencing of active transposable elements in plants

(2015) Dalen Fultz et al.   CURRENT OPINION IN PLANT BIOLOGY

The genomics of plant sex chromosomes

(2015) Boris Vyskot et al.   PLANT SCIENCE

The relative and absolute frequencies of angiosperm sexual systems: Dioecy, monoecy, gynodioecy, and an updated online database

(2014) Susanne S. Renner   AMERICAN JOURNAL OF BOTANY

Accumulation of interspersed and sex-specific repeats in the non-recombining region of papaya sex chromosomes

(2014) Jong-Kuk Na et al.   BMC GENOMICS

Guanine quadruplexes are formed by specific regions of human transposable elements

(2014) Matej Lexa et al.   BMC GENOMICS

mPing: The bursting transposon

(2014) Ken Naito et al.   BREEDING SCIENCE

Identification of a Novel Retrotransposon with Sex Chromosome-Specific Distribution in Silene latifolia

(2014) Tereza Kralova et al.   CYTOGENETIC AND GENOME RESEARCH

miRNAs trigger widespread epigenetically activated siRNAs from transposons in Arabidopsis

(2014) Kate M. Creasey et al.   NATURE

Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome

(2014) Zdenek Kubat et al.   NEW PHYTOLOGIST

A Y-chromosome-encoded small RNA acts as a sex determinant in persimmons

(2014) T. Akagi et al.   SCIENCE

Repetitive Sequences in Plant Nuclear DNA: Types, Distribution, Evolution and Function

(2014) Shweta Mehrotra et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Strong Accumulation of Chloroplast DNA in the Y Chromosomes of Rumex acetosa and Silene latifolia

(2013) P. Steflova et al.   CYTOGENETIC AND GENOME RESEARCH

Parent-of-origin control of transgenerational retrotransposon proliferation in Arabidopsis

(2013) Jon Reinders et al.   EMBO REPORTS

EVOLUTION OF SEX DETERMINATION SYSTEMS WITH HETEROGAMETIC MALES AND FEMALES INSILENE

(2013) Veronika Slancarova et al.   EVOLUTION

Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa

(2013) Pavlina Steflova et al.   Genome Biology and Evolution

Organelle DNA accumulation in the recently evolved papaya sex chromosomes

(2013) Robert VanBuren et al.   MOLECULAR GENETICS AND GENOMICS

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Quadruplex-forming sequences occupy discrete regions inside plant LTR retrotransposons

(2013) M. Lexa et al.   NUCLEIC ACIDS RESEARCH

Expansion of Microsatellites on Evolutionary Young Y Chromosome

(2013) Eduard Kejnovský et al.   PLoS One

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

Molecular Cytogenetics (FISH, GISH) of Coccinia grandis: A ca. 3 myr-Old Species of Cucurbitaceae with the Largest Y/Autosome Divergence in Flowering Plants

(2012) A. Sousa et al.   CYTOGENETIC AND GENOME RESEARCH

Human Male Meiotic Sex Chromosome Inactivation

(2012) Marieke de Vries et al.   PLoS One

Genomic Diversity in Two Related Plant Species with and without Sex Chromosomes - Silene latifolia and S. vulgaris

(2012) Radim Cegan et al.   PLoS One

Rapid divergence and expansion of the X chromosome in papaya

(2012) A. R. Gschwend et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Sex Chromosomes in Land Plants

(2011) Ray Ming et al.   Annual Review of Plant Biology

Plant Y Chromosome Degeneration Is Retarded by Haploid Purifying Selection

(2011) Margarita V. Chibalina et al.   CURRENT BIOLOGY

Small RNAs and transposon silencing in plants

(2011) Hidetaka Ito   DEVELOPMENT GROWTH & DIFFERENTIATION

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

The role of repetitive DNA in structure and evolution of sex chromosomes in plants

(2009) E Kejnovsky et al.   HEREDITY

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE

Contrasting evolutionary dynamics between angiosperm and mammalian genomes

(2009) Eduard Kejnovsky et al.   TRENDS IN ECOLOGY & EVOLUTION

Epigenetic Regulation of Transposable Elements in Plants

(2008) Damon Lisch   Annual Review of Plant Biology

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes

(2008) Tomas Cermak et al.   CHROMOSOME RESEARCH

Recent Spread of a Retrotransposon in the Silene latifolia Genome, Apart From the Y Chromosome

(2008) D. A. Filatov et al.   GENETICS

Microsatellite accumulation on the Y chromosome in Silene latifolia

(2008) Zdenek Kubat et al.   GENOME

DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya

(2008) W. Zhang et al.   GENOME RESEARCH

Accumulation of Y-specific satellite DNAs during the evolution of Rumex acetosa sex chromosomes

(2008) Beatrice Mariotti et al.   MOLECULAR GENETICS AND GENOMICS