Possible mechanisms responsible for absence of a retrotransposon family on a plant Y chromosome

The Arabidopsis Nucleosome Remodeler DDM1 Allows DNA Methyltransferases to Access H1-Containing Heterochromatin

(2013) Assaf Zemach et al.   CELL

Contrasting Patterns of Transposable Element and Satellite Distribution on Sex Chromosomes (XY1Y2) in the Dioecious Plant Rumex acetosa

(2013) Pavlina Steflova et al.   Genome Biology and Evolution

Polymerase IV occupancy at RNA-directed DNA methylation sites requires SHH1

(2013) Julie A. Law et al.   NATURE

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Reprogramming of DNA Methylation in Pollen Guides Epigenetic Inheritance via Small RNA

(2012) Joseph P. Calarco et al.   CELL

Imprinting: DNA Methyltransferases Illuminate Reprogramming

(2012) Joseph P. Calarco et al.   CURRENT BIOLOGY

DNA Methylation Dynamics during Sexual Reproduction in Arabidopsis thaliana

(2012) Pauline E. Jullien et al.   CURRENT BIOLOGY

The role of long non-coding RNA in transcriptional gene silencing

(2012) Andrzej T Wierzbicki   CURRENT OPINION IN PLANT BIOLOGY

Spatial and functional relationships among Pol V-associated loci, Pol IV-dependent siRNAs, and cytosine methylation in the Arabidopsis epigenome

(2012) A. T. Wierzbicki et al.   GENES & DEVELOPMENT

A widespread occurrence of extra open reading frames in plant Ty3/gypsy retrotransposons

(2012) Veronika Steinbauerová et al.   GENETICA

Bisprimer—A Program for the Design of Primers for Bisulfite-Based Genomic Sequencing of Both Plant and Mammalian DNA Samples

(2012) Viera Kovacova et al.   JOURNAL OF HEREDITY

In Vitro Transcription Activities of Pol IV, Pol V, and RDR2 Reveal Coupling of Pol IV and RDR2 for dsRNA Synthesis in Plant RNA Silencing

(2012) Jeremy R. Haag et al.   MOLECULAR CELL

Global alteration of microRNAs and transposon-derived small RNAs in cotton (Gossypium hirsutum) during Cotton leafroll dwarf polerovirus (CLRDV) infection

(2012) Elisson Romanel et al.   PLANT MOLECULAR BIOLOGY

Genomic Diversity in Two Related Plant Species with and without Sex Chromosomes - Silene latifolia and S. vulgaris

(2012) Radim Cegan et al.   PLoS One

Active DNA Demethylation in Plant Companion Cells Reinforces Transposon Methylation in Gametes

(2012) C. A. Ibarra et al.   SCIENCE

Co-evolution between transposable elements and their hosts: a major factor in genome size evolution?

(2011) J. Arvid Ågren et al.   CHROMOSOME RESEARCH

Structural insights into the retroviral DNA integration apparatus

(2011) Peter Cherepanov et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

About PAR: The distinct evolutionary dynamics of the pseudoautosomal region

(2011) Sarah P. Otto et al.   TRENDS IN GENETICS

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

Structure and evolution of Apetala3, a sex-linked gene in Silene latifolia

(2010) Radim Cegan et al.   BMC PLANT BIOLOGY

Dioecious Silene latifolia plants show sexual dimorphism in the vegetative stage

(2010) Jitka Zluvova et al.   BMC PLANT BIOLOGY

Genetic variation of copia suppression in Drosophila melanogaster

(2010) W Vu et al.   HEREDITY

Epigenetic Reprogramming and Small RNA Silencing of Transposable Elements in Pollen

(2009) R. Keith Slotkin et al.   CELL

Evolution of Neo-Sex Chromosomes in Silene diclinis

(2009) Elaine C. Howell et al.   GENETICS

Bursts of retrotransposition reproduced in Arabidopsis

(2009) Sayuri Tsukahara et al.   NATURE

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extensive Demethylation of Repetitive Elements During Seed Development Underlies Gene Imprinting

(2009) M. Gehring et al.   SCIENCE

Genome-Wide Demethylation of Arabidopsis Endosperm

(2009) T.-F. Hsieh et al.   SCIENCE

Conflicting Phylogenetic Signals in the SlX1/Y1 Gene in Silene

(2008) Anja Rautenberg et al.   BMC EVOLUTIONARY BIOLOGY

Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes

(2008) Tomas Cermak et al.   CHROMOSOME RESEARCH

Recent Spread of a Retrotransposon in the Silene latifolia Genome, Apart From the Y Chromosome

(2008) D. A. Filatov et al.   GENETICS

Microsatellite accumulation on the Y chromosome in Silene latifolia

(2008) Zdenek Kubat et al.   GENOME

Natural selection on gene function drives the evolution of LTR retrotransposon families in the rice genome

(2008) R. S. Baucom et al.   GENOME RESEARCH

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH

Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre

(2008) Veronika Steinbauerová et al.   MOLECULAR GENETICS AND GENOMICS