Integrative miRNA-Gene Expression Analysis Enables Refinement of Associated Biology and Prediction of Response to Cetuximab in Head and Neck Squamous Cell Cancer

Methods for the integration of multi-omics data: mathematical aspects

(2016) Matteo Bersanelli et al.   BMC BIOINFORMATICS

Functional Genomics Uncover the Biology behind the Responsiveness of Head and Neck Squamous Cell Cancer Patients to Cetuximab

(2016) P. Bossi et al.   CLINICAL CANCER RESEARCH

Antitumor Activity of Pembrolizumab in Biomarker-Unselected Patients With Recurrent and/or Metastatic Head and Neck Squamous Cell Carcinoma: Results From the Phase Ib KEYNOTE-012 Expansion Cohort

(2016) Laura Q.M. Chow et al.   JOURNAL OF CLINICAL ONCOLOGY

CD24 associates with EGFR and supports EGF/EGFR signaling via RhoA in gastric cancer cells

(2016) Wenjie Deng et al.   Journal of Translational Medicine

Development and validation of a microRNA-based signature (MiROvaR) to predict early relapse or progression of epithelial ovarian cancer: a cohort study

(2016) Marina Bagnoli et al.   LANCET ONCOLOGY

ITGA6 is directly regulated by hypoxia-inducible factors and enriches for cancer stem cell activity and invasion in metastatic breast cancer models

(2016) Danielle L. Peacock Brooks et al.   Molecular Cancer

Nivolumab for Recurrent Squamous-Cell Carcinoma of the Head and Neck

(2016) Robert L. Ferris et al.   NEW ENGLAND JOURNAL OF MEDICINE

GOplot: an R package for visually combining expression data with functional analysis: Fig. 1.

(2015) Wencke Walter et al.   BIOINFORMATICS

Comprehensive genomic characterization of head and neck squamous cell carcinomas

(2015)   NATURE

Methods of integrating data to uncover genotype–phenotype interactions

(2015) Marylyn D. Ritchie et al.   NATURE REVIEWS GENETICS

miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database

(2015) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

Head and neck cancer subtypes with biological and clinical relevance: Meta-analysis of gene-expression data

(2015) Loris De Cecco et al.   Oncotarget

CCA: AnRPackage to Extend Canonical Correlation Analysis

(2015) Ignacio Gonzalez et al.   Journal of Statistical Software

Interleukin 21 Controls mRNA and MicroRNA Expression in CD40-Activated Chronic Lymphocytic Leukemia Cells

(2015) Loris De Cecco et al.   PLoS One

Comprehensive gene expression meta-analysis of head and neck squamous cell carcinoma microarray data defines a robust survival predictor

(2014) L. De Cecco et al.   ANNALS OF ONCOLOGY

netClass: an R-package for network based, integrative biomarker signature discovery

(2014) Y. Cun et al.   BIOINFORMATICS

Data integration in the era of omics: current and future challenges

(2014) David Gomez-Cabrero et al.   BMC Systems Biology

Integrative Analysis of Head and Neck Cancer Identifies Two Biologically Distinct HPV and Three Non-HPV Subtypes

(2014) M. K. Keck et al.   CLINICAL CANCER RESEARCH

MicroRNA signatures in hereditary breast cancer

(2013) Rosa Murria Estal et al.   BREAST CANCER RESEARCH AND TREATMENT

Network and Data Integration for Biomarker Signature Discovery via Network Smoothed T-Statistics

(2013) Yupeng Cun et al.   PLoS One

MAGIA2: from miRNA and genes expression data integrative analysis to microRNA-transcription factor mixed regulatory circuits (2012 update)

(2012) A. Bisognin et al.   NUCLEIC ACIDS RESEARCH

Visualising associations between paired ‘omics’ data sets

(2012) Ignacio González et al.   BioData Mining

Sparse PLS discriminant analysis: biologically relevant feature selection and graphical displays for multiclass problems

(2011) Kim-Anh Lê Cao et al.   BMC BIOINFORMATICS

Pre-processing and differential expression analysis of Agilent microRNA arrays using the AgiMicroRna Bioconductor library

(2011) Pedro López-Romero   BMC GENOMICS

L1 cell adhesion molecule and epidermal growth factor receptor activation confer cisplatin resistance in intrahepatic cholangiocarcinoma cells

(2011) Hyunho Yoon et al.   CANCER LETTERS

Emerging drugs to treat squamous cell carcinomas of the head and neck

(2010) Christopher Fung et al.   EXPERT OPINION ON EMERGING DRUGS

integrOmics: an R package to unravel relationships between two omics datasets

(2009) Kim-Anh Lê Cao et al.   BIOINFORMATICS

Accurate microRNA target prediction correlates with protein repression levels

(2009) Manolis Maragkakis et al.   BMC BIOINFORMATICS

Meta-analysis of chemotherapy in head and neck cancer (MACH-NC): An update on 93 randomised trials and 17,346 patients

(2009) Jean-Pierre Pignon et al.   RADIOTHERAPY AND ONCOLOGY

Sparse Canonical Correlation Analysis with Application to Genomic Data Integration

(2009) Elena Parkhomenko et al.   Statistical Applications in Genetics and Molecular Biology