Genome-Wide Target Analyses of Otx2 Homeoprotein in Postnatal Cortex

The antioxidant protein Oxr1 influences aspects of mitochondrial morphology

(2016) Yixing Wu et al.   FREE RADICAL BIOLOGY AND MEDICINE

SZDB: A Database for Schizophrenia Genetic Research

(2016) Yong Wu et al.   SCHIZOPHRENIA BULLETIN

Transcriptome-wide mega-analyses reveal joint dysregulation of immunologic genes and transcription regulators in brain and blood in schizophrenia

(2016) Jonathan L. Hess et al.   SCHIZOPHRENIA RESEARCH

Prolonged Period of Cortical Plasticity upon Redox Dysregulation in Fast-Spiking Interneurons

(2015) Hirofumi Morishita et al.   BIOLOGICAL PSYCHIATRY

The NMDA receptor ‘glycine modulatory site’ in schizophrenia: d-serine, glycine, and beyond

(2015) Darrick T Balu et al.   CURRENT OPINION IN PHARMACOLOGY

The Evolutionarily Conserved Tre2/Bub2/Cdc16 (TBC), Lysin Motif (LysM), Domain Catalytic (TLDc) Domain Is Neuroprotective against Oxidative Stress

(2015) Mattéa J. Finelli et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Interneuron epigenomes during the critical period of cortical plasticity: Implications for schizophrenia

(2015) Hirofumi Morishita et al.   NEUROBIOLOGY OF LEARNING AND MEMORY

Clock Genes Control Cortical Critical Period Timing

(2015) Yohei Kobayashi et al.   NEURON

Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain

(2015) Alisa Mo et al.   NEURON

Transcriptomics of critical period of visual cortical plasticity in mice

(2015) Jamie Benoit et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeting Oxidative Stress and Aberrant Critical Period Plasticity in the Developmental Trajectory to Schizophrenia

(2015) Kim Q. Do et al.   SCHIZOPHRENIA BULLETIN

Mitochondrial Protection by Exogenous Otx2 in Mouse Retinal Neurons

(2015) Hyoung-Tai Kim et al.   Cell Reports

OTX2 Transcription Factor Controls Regional Patterning within the Medial Ganglionic Eminence and Regional Identity of the Septum

(2015) Renée V. Hoch et al.   Cell Reports

Synaptic, transcriptional and chromatin genes disrupted in autism

(2014) Silvia De Rubeis et al.   NATURE

Retinal Input Directs the Recruitment of Inhibitory Interneurons into Thalamic Visual Circuits

(2014) Bruno Golding et al.   NEURON

Otx2 ChIP-seq Reveals Unique and Redundant Functions in the Mature Mouse Retina

(2014) Alexander Samuel et al.   PLoS One

Occupancy of tissue-specific cis-regulatory modules by Otx2 and TLE/Groucho for embryonic head specification

(2014) Yuuri Yasuoka et al.   Nature Communications

Otx2 and Oct4 Drive Early Enhancer Activation during Embryonic Stem Cell Transition from Naive Pluripotency

(2014) Shen-Hsi Yang et al.   Cell Reports

The homeobox gene Otx2 in development and disease

(2013) Francis Beby et al.   EXPERIMENTAL EYE RESEARCH

DROMPA: easy-to-handle peak calling and visualization software for the computational analysis and validation of ChIP-seq data

(2013) Ryuichiro Nakato et al.   GENES TO CELLS

Loss of Otx2 in the Adult Retina Disrupts Retinal Pigment Epithelium Function, Causing Photoreceptor Degeneration

(2013) M. Housset et al.   JOURNAL OF NEUROSCIENCE

From neural development to cognition: unexpected roles for chromatin

(2013) Jehnna L. Ronan et al.   NATURE REVIEWS GENETICS

Perineuronal nets protect fast-spiking interneurons against oxidative stress

(2013) J.-H. Cabungcal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Choroid-Plexus-Derived Otx2 Homeoprotein Constrains Adult Cortical Plasticity

(2013) Julien Spatazza et al.   Cell Reports

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

OTX2 sustains a bivalent-like state of OTX2-bound promoters in medulloblastoma by maintaining their H3K27me3 levels

(2012) Jens Bunt et al.   ACTA NEUROPATHOLOGICA

Early-Life Insults Impair Parvalbumin Interneurons via Oxidative Stress: Reversal by N-Acetylcysteine

(2012) Jan-Harry Cabungcal et al.   BIOLOGICAL PSYCHIATRY

Trehalose-enhanced isolation of neuronal sub-types from adult mouse brain

(2012) Alka Saxena et al.   BIOTECHNIQUES

Amphetamine-induced psychosis - a separate diagnostic entity or primary psychosis triggered in the vulnerable?

(2012) Jørgen G Bramness et al.   BMC Psychiatry

Otx2 Binding to Perineuronal Nets Persistently Regulates Plasticity in the Mature Visual Cortex

(2012) M. Beurdeley et al.   JOURNAL OF NEUROSCIENCE

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Candidate genes in ocular dominance plasticity

(2012) Rietman Liset   Frontiers in Neuroscience

Candidate genes for panhypopituitarism identified by gene expression profiling

(2011) Amanda H. Mortensen et al.   PHYSIOLOGICAL GENOMICS

Oxr1 Is Essential for Protection against Oxidative Stress-Induced Neurodegeneration

(2011) Peter L. Oliver et al.   PLoS Genetics

Autism: A “Critical Period” Disorder?

(2011) Jocelyn J. LeBlanc et al.   NEURAL PLASTICITY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

OTX2 microphthalmia syndrome: four novel mutations and delineation of a phenotype

(2010) KF Schilter et al.   CLINICAL GENETICS

From brain formation to plasticity: Insights on Otx2 homeoprotein

(2010) Sayaka Sugiyama et al.   DEVELOPMENT GROWTH & DIFFERENTIATION

GREAT improves functional interpretation of cis-regulatory regions

(2010) Cory Y McLean et al.   NATURE BIOTECHNOLOGY

Loss of Arc renders the visual cortex impervious to the effects of sensory experience or deprivation

(2010) Cortina L McCurry et al.   NATURE NEUROSCIENCE

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Annotating the human genome with Disease Ontology

(2009) John D Osborne et al.   BMC GENOMICS

Meis2 competes with the Groucho co-repressor Tle4 for binding to Otx2 and specifies tectal fate without induction of a secondary midbrain-hindbrain boundary organizer

(2009) Z. Agoston et al.   DEVELOPMENT

Transcriptional and Electrophysiological Maturation of Neocortical Fast-Spiking GABAergic Interneurons

(2009) B. W. Okaty et al.   JOURNAL OF NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Fluorescent labeling of both GABAergic and glycinergic neurons in vesicular GABA transporter (VGAT)–Venus transgenic mouse

(2009) Y. Wang et al.   NEUROSCIENCE

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Experience-Dependent Transfer of Otx2 Homeoprotein into the Visual Cortex Activates Postnatal Plasticity

(2008) Sayaka Sugiyama et al.   CELL

Anterior-posterior graded response to Otx2 controls proliferation and differentiation of dopaminergic progenitors in the ventral mesencephalon

(2008) D. Omodei et al.   DEVELOPMENT

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH

Gene expression patterns in visual cortex during the critical period: Synaptic stabilization and reversal by visual deprivation

(2008) A. W. Lyckman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY