Comparative Genomics of Ralstonia solanacearum Identifies Candidate Genes Associated with Cool Virulence

Degradation of the Plant Defense Signal Salicylic Acid Protects Ralstonia solanacearum from Toxicity and Enhances Virulence on Tobacco

(2016) Tiffany M. Lowe-Power et al.   mBio

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome: Table 1

(2015) Shea N Gardner et al.   BIOINFORMATICS

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Prediction of microbial phenotypes based on comparative genomics

(2015) Roman Feldbauer et al.   BMC BIOINFORMATICS

Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity

(2015) Florent Ailloud et al.   BMC GENOMICS

SecReT6: a web-based resource for type VI secretion systems found in bacteria

(2015) Jun Li et al.   ENVIRONMENTAL MICROBIOLOGY

Pantoea ananatisUtilizes a Type VI Secretion System for Pathogenesis and Bacterial Competition

(2015) Divine Y. Shyntum et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors

(2015) Christopher R. Clarke et al.   PHYTOPATHOLOGY

Comparative Transcriptome Analysis Reveals Cool Virulence Factors of Ralstonia solanacearum Race 3 Biovar 2

(2015) Fanhong Meng et al.   PLoS One

Proteomic comparison of Ralstonia solanacearum strains reveals temperature dependent virulence factors

(2014) Ana M Bocsanczy et al.   BMC GENOMICS

Agrobacterium tumefaciens Deploys a Superfamily of Type VI Secretion DNase Effectors as Weapons for Interbacterial Competition In Planta

(2014) Lay-Sun Ma et al.   Cell Host & Microbe

Type VI secretion system effectors: poisons with a purpose

(2014) Alistair B. Russell et al.   NATURE REVIEWS MICROBIOLOGY

Update on RefSeq microbial genomes resources

(2014) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Characterizing the genetic basis of bacterial phenotypes using genome-wide association studies: a new direction for bacteriology

(2014) Timothy D Read et al.   Genome Medicine

Snpdat: Easy and rapid annotation of results from de novo snp discovery projects for model and non-model organisms

(2013) Anthony G Doran et al.   BMC BIOINFORMATICS

Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex

(2013) Nemo Peeters et al.   BMC GENOMICS

A View to a Kill: The Bacterial Type VI Secretion System

(2013) Brian T. Ho et al.   Cell Host & Microbe

Haemolysin Coregulated Protein Is an Exported Receptor and Chaperone of Type VI Secretion Substrates

(2013) Julie M. Silverman et al.   MOLECULAR CELL

PAAR-repeat proteins sharpen and diversify the type VI secretion system spike

(2013) Mikhail M. Shneider et al.   NATURE

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Diversity ofRalstonia solanacearumin French Guiana Expands Knowledge of the “Emerging Ecotype”

(2013) P. Deberdt et al.   PHYTOPATHOLOGY

Identification of Optimum Sequencing Depth Especially for De Novo Genome Assembly of Small Genomes Using Next Generation Sequencing Data

(2013) Aarti Desai et al.   PLoS One

Rhs proteins from diverse bacteria mediate intercellular competition

(2013) S. Koskiniemi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

A Widespread Bacterial Type VI Secretion Effector Superfamily Identified Using a Heuristic Approach

(2012) Alistair B. Russell et al.   Cell Host & Microbe

Sequencing of K60, Type Strain of the Major Plant Pathogen Ralstonia solanacearum

(2012) B. Remenant et al.   JOURNAL OF BACTERIOLOGY

Top 10 plant pathogenic bacteria in molecular plant pathology

(2012) JOHN MANSFIELD et al.   MOLECULAR PLANT PATHOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

MicroScope—an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data

(2012) David Vallenet et al.   NUCLEIC ACIDS RESEARCH

Distribution and diversity of bacterial secretion systems across metagenomic datasets

(2012) Matthieu Barret et al.   Environmental Microbiology Reports

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

The Pfam protein families database

(2011) M. Punta et al.   NUCLEIC ACIDS RESEARCH

Comparative Effect of Low Temperature on Virulence and Twitching Motility ofRalstonia solanacearumStrains Present in Florida

(2011) Ana M. Bocsanczy et al.   PHYTOPATHOLOGY

Involvement of Type IV Pili in Pathogenicity of Plant Pathogenic Bacteria

(2011) Saul Burdman et al.   Genes

Genomes of three tomato pathogens within the Ralstonia solanacearum species complex reveal significant evolutionary divergence

(2010) Benoît Remenant et al.   BMC GENOMICS

A Type VI Secretion System of Pseudomonas aeruginosa Targets a Toxin to Bacteria

(2010) Rachel D. Hood et al.   Cell Host & Microbe

Assembly algorithms for next-generation sequencing data

(2010) Jason R. Miller et al.   GENOMICS

The Vibrio cholerae type VI secretion system displays antimicrobial properties

(2010) D. L. MacIntyre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

What is type VI secretion doing in all those bugs?

(2010) Sandra Schwarz et al.   TRENDS IN MICROBIOLOGY

Burkholderia Type VI Secretion Systems Have Distinct Roles in Eukaryotic and Bacterial Cell Interactions

(2010) Sandra Schwarz et al.   PLoS Pathogens

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement

(2009) Andrew P Jackson et al.   BMC GENOMICS

The type VI secretion system: translocation of effectors and effector-domains

(2009) Stefan Pukatzki et al.   CURRENT OPINION IN MICROBIOLOGY

Interactions with Hosts at Cool Temperatures, Not Cold Tolerance, Explain the Unique Epidemiology ofRalstonia solanacearumRace 3 Biovar 2

(2009) Annett Milling et al.   PHYTOPATHOLOGY

Type VI secretion apparatus and phage tail-associated protein complexes share a common evolutionary origin

(2009) P. G. Leiman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial genotype–phenotype mapping by class association rule mining

(2008) Makio Tamura et al.   BIOINFORMATICS

Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins

(2008) S. E. Maddocks et al.   MICROBIOLOGY-SGM