Fungal ITS1 Deep-Sequencing Strategies to Reconstruct the Composition of a 26-Species Community and Evaluation of the Gut Mycobiota of Healthy Japanese Individuals

Yeasts in the Gut

(2018) Jürgen Schulze et al.   Deutsches Arzteblatt International

Mycobiome: Approaches to analysis of intestinal fungi

(2015) Jie Tang et al.   JOURNAL OF IMMUNOLOGICAL METHODS

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Review article: fungal microbiota and digestive diseases

(2014) Z. K. Wang et al.   ALIMENTARY PHARMACOLOGY & THERAPEUTICS

Amplicon –Based Metagenomic Analysis of Mixed Fungal Samples Using Proton Release Amplicon Sequencing

(2014) Daniel P. Tonge et al.   PLoS One

The cross-talk between opportunistic fungi and the mammalian host via microbiota’s metabolism

(2014) Luigina Romani et al.   Seminars in Immunopathology

Finding needles in haystacks: linking scientific names, reference specimens and molecular data for Fungi

(2014) C. L. Schoch et al.   Database-The Journal of Biological Databases and Curation

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Topographic diversity of fungal and bacterial communities in human skin

(2013) Keisha Findley et al.   NATURE

Archaea and Fungi of the Human Gut Microbiome: Correlations with Diet and Bacterial Residents

(2013) Christian Hoffmann et al.   PLoS One

The emerging world of the fungal microbiome

(2013) Gary B. Huffnagle et al.   TRENDS IN MICROBIOLOGY

The human mycobiome in health and disease

(2013) Lijia Cui et al.   Genome Medicine

Microbial phylogenetic profiling with the Pacific Biosciences sequencing platform

(2013) Erin B Fichot et al.   Microbiome

The Malassezia Genus in Skin and Systemic Diseases

(2012) G. Gaitanis et al.   CLINICAL MICROBIOLOGY REVIEWS

Candida albicans and Bacterial Microbiota Interactions in the Cecum during Recolonization following Broad-Spectrum Antibiotic Therapy

(2012) Katie L. Mason et al.   INFECTION AND IMMUNITY

The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites

(2012) Luke K. Ursell et al.   JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY

Characterization of the Fungal Microbiota (Mycobiome) in Healthy and Dandruff-Afflicted Human Scalps

(2012) Hee Kuk Park et al.   PLoS One

Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi

(2012) C. L. Schoch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interactions Between Commensal Fungi and the C-Type Lectin Receptor Dectin-1 Influence Colitis

(2012) I. D. Iliev et al.   SCIENCE

A tool kit for quantifying eukaryotic rRNA gene sequences from human microbiome samples

(2012) Serena Dollive et al.   GENOME BIOLOGY

Interplay between the Gastric Bacterial Microbiota and Candida albicans during Postantibiotic Recolonization and Gastritis

(2011) Katie L. Mason et al.   INFECTION AND IMMUNITY

The opportunistic yeast pathogen Trichosporon asahii colonizes the skin of healthy individuals: analysis of 380 healthy individuals by age and gender using a nested polymerase chain reaction assay

(2011) Enshi Zhang et al.   MICROBIOLOGY AND IMMUNOLOGY

ITS-1 versus ITS-2 pyrosequencing: a comparison of fungal populations in truffle grounds

(2011) Antonietta Mello et al.   MYCOLOGIA

Enterotypes of the human gut microbiome

(2011) Manimozhiyan Arumugam et al.   NATURE

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Correlation between gastrointestinal fungi and varying degrees of chronic hepatitis B virus infection

(2010) Yu Chen et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Analysis of the Serum Levels of Fungi-Specific Immunoglobulin E in Patients with Allergic Diseases

(2010) Feng-Ying Chang et al.   INTERNATIONAL ARCHIVES OF ALLERGY AND IMMUNOLOGY

Gut colonization byCandida albicansaggravates inflammation in the gut and extra-gut tissues in mice

(2010) Kei Sonoyama et al.   MEDICAL MYCOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Characterization of the Oral Fungal Microbiome (Mycobiome) in Healthy Individuals

(2010) Mahmoud A. Ghannoum et al.   PLoS Pathogens

Analysis of Malassezia microbiota in healthy superficial human skin and in psoriatic lesions by multiplex real-time PCR

(2008) Luciana C. Paulino et al.   FEMS YEAST RESEARCH