Metagenome-Wide Association Study and Machine Learning Prediction of Bulk Soil Microbiome and Crop Productivity
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Metagenome-Wide Association Study and Machine Learning Prediction of Bulk Soil Microbiome and Crop Productivity
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 8, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2017-04-03
DOI
10.3389/fmicb.2017.00519
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The Plant Microbiota: Systems-Level Insights and Perspectives
- (2016) Daniel B. Müller et al. Annual Review of Genetics
- Effects of soybean variety and Bradyrhizobium strains on yield, protein content and biological nitrogen fixation under cool growing conditions in Germany
- (2016) Stéphanie Zimmer et al. EUROPEAN JOURNAL OF AGRONOMY
- Culturable endophytic bacterial communities associated with field-grown soybean
- (2016) K.B. de Almeida Lopes et al. JOURNAL OF APPLIED MICROBIOLOGY
- Metagenome-wide association studies: fine-mining the microbiome
- (2016) Jun Wang et al. NATURE REVIEWS MICROBIOLOGY
- Characterization of Disease Resistance Loci in the USDA Soybean Germplasm Collection Using Genome-Wide Association Studies
- (2016) Hao-Xun Chang et al. PHYTOPATHOLOGY
- Impact of long-term cropping of glyphosate-resistant transgenic soybean [Glycine max (L.) Merr.] on soil microbiome
- (2016) Letícia Carlos Babujia et al. TRANSGENIC RESEARCH
- Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights
- (2016) Edoardo Pasolli et al. PLoS Computational Biology
- Identification and Comparative Analysis of Differential Gene Expression in Soybean Leaf Tissue under Drought and Flooding Stress Revealed by RNA-Seq
- (2016) Wei Chen et al. Frontiers in Plant Science
- A Genetic Relationship between Phosphorus Efficiency and Photosynthetic Traits in Soybean As Revealed by QTL Analysis Using a High-Density Genetic Map
- (2016) Hongyan Li et al. Frontiers in Plant Science
- Integrated analysis of root microbiomes of soybean and wheat from agricultural fields
- (2016) Nicolás Rascovan et al. Scientific Reports
- Association of Shifting Populations in the Root Zone Microbiome of Millet with Enhanced Crop Productivity in the Sahel Region (Africa)
- (2015) Spencer J. Debenport et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Physiological and management factors contributing to soybean potential yield
- (2015) Ryan J. Van Roekel et al. FIELD CROPS RESEARCH
- Role of root microbiota in plant productivity
- (2015) A. Tkacz et al. JOURNAL OF EXPERIMENTAL BOTANY
- The oral and gut microbiomes are perturbed in rheumatoid arthritis and partly normalized after treatment
- (2015) Xuan Zhang et al. NATURE MEDICINE
- The MG-RAST metagenomics database and portal in 2015
- (2015) Andreas Wilke et al. NUCLEIC ACIDS RESEARCH
- Genome-Wide Association Analysis of Diverse Soybean Genotypes Reveals Novel Markers for Nitrogen Traits
- (2015) Arun Prabhu Dhanapal et al. Plant Genome
- Amplicon-based metagenomics identified candidate organisms in soils that caused yield decline in strawberry
- (2015) Xiangming Xu et al. Horticulture Research
- Taxonomical and functional microbial community selection in soybean rhizosphere
- (2014) Lucas W Mendes et al. ISME Journal
- An introduction to the analysis of shotgun metagenomic data
- (2014) Thomas J. Sharpton Frontiers in Plant Science
- Genetic Diversity and Geographical Distribution of Indigenous Soybean-Nodulating Bradyrhizobia in the United States
- (2013) Sokichi Shiro et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- CO-INOCULATION OF SOYBEAN (GLYCINE MAX) WITHACTINOMYCETESANDBRADYRHIZOBIUM JAPONICUMENHANCES PLANT GROWTH, NITROGENASE ACTIVITY AND PLANT NUTRITION
- (2013) Pongrawee Nimnoi et al. JOURNAL OF PLANT NUTRITION
- Richness of human gut microbiome correlates with metabolic markers
- (2013) Emmanuelle Le Chatelier et al. NATURE
- Gut metagenome in European women with normal, impaired and diabetic glucose control
- (2013) Fredrik H. Karlsson et al. NATURE
- Diversity and heritability of the maize rhizosphere microbiome under field conditions
- (2013) J. A. Peiffer et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- The M5nr: a novel non-redundant database containing protein sequences and annotations from multiple sources and associated tools
- (2012) Andreas Wilke et al. BMC BIOINFORMATICS
- Phylogeny and Molecular Evolution of the Green Algae
- (2012) Frederik Leliaert et al. CRITICAL REVIEWS IN PLANT SCIENCES
- Effects of endophytic actinomycetes andBradyrhizobium japonicumstrains on growth, nodulation, nitrogen fixation and seed weight of different soybean varieties
- (2012) Khin Myat Soe et al. SOIL SCIENCE AND PLANT NUTRITION
- The rhizosphere microbiome and plant health
- (2012) Roeland L. Berendsen et al. TRENDS IN PLANT SCIENCE
- Snow ball earth and the split of Streptophyta and Chlorophyta
- (2012) Burkhard Becker TRENDS IN PLANT SCIENCE
- Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients
- (2011) Noah Fierer et al. ISME Journal
- Beyond the bacterium: planctomycetes challenge our concepts of microbial structure and function
- (2011) John A. Fuerst et al. NATURE REVIEWS MICROBIOLOGY
- Metagenomic Analyses: Past and Future Trends
- (2010) Carola Simon et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Soil bacterial and fungal communities across a pH gradient in an arable soil
- (2010) Johannes Rousk et al. ISME Journal
- Temporal and Spatial Dynamics of Bacterial Community in the Rhizosphere of Soybean Genotypes Grown in a Black Soil
- (2009) Jian JIN et al. PEDOSPHERE
- The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes
- (2008) F Meyer et al. BMC BIOINFORMATICS
- Nitrogen uptake, fixation and response to fertilizer N in soybeans: A review
- (2008) F. Salvagiotti et al. FIELD CROPS RESEARCH
- Bacterial communities in soybean rhizosphere in response to soil type, soybean genotype, and their growth stage
- (2008) Yanxia Xu et al. SOIL BIOLOGY & BIOCHEMISTRY
- Endophytic occupation of peanut root nodules by opportunistic Gammaproteobacteria
- (2008) Fernando Ibáñez et al. SYSTEMATIC AND APPLIED MICROBIOLOGY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreBecome a Peeref-certified reviewer
The Peeref Institute provides free reviewer training that teaches the core competencies of the academic peer review process.
Get Started