Effects of early feeding on the host rumen transcriptome and bacterial diversity in lambs

Propionate induces mRNA expression of gluconeogenic genes in bovine calf hepatocytes

(2016) Qian Zhang et al.   JOURNAL OF DAIRY SCIENCE

Taxonomic Identification of Ruminal Epithelial Bacterial Diversity during Rumen Development in Goats

(2015) Jinzhen Jiao et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Rumen development process in goats as affected by supplemental feeding v. grazing: age-related anatomic development, functional achievement and microbial colonisation

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Enhancing the detection of barcoded reads in high throughput DNA sequencing data by controlling the false discovery rate

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(2014) Huiyun Li et al.   BMC GENOMICS

Differences in monocarboxylic acid transporter type 1 expression in rumen epithelium of newborn calves due to age and milk or milk replacer feeding

(2014) J. Flaga et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

Transcriptional regulators transforming growth factor-β1 and estrogen-related receptor-α identified as putative mediators of calf rumen epithelial tissue development and function during weaning1

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Characterization of the Core Rumen Microbiome in Cattle during Transition from Forage to Concentrate as Well as during and after an Acidotic Challenge

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Bacterial carbohydrate-degrading capacity in foal faeces: changes from birth to pre-weaning and the impact of maternal supplementation with fermented feed products

(2013) Céline Faubladier et al.   BRITISH JOURNAL OF NUTRITION

Gene expression in bovine rumen epithelium during weaning identifies molecular regulators of rumen development and growth

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Exploring the bovine rumen bacterial community from birth to adulthood

(2013) Elie Jami et al.   ISME Journal

Establishment of ruminal bacterial community in dairy calves from birth to weaning is sequential

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In vitroevaluation on neutral detergent fiber and cellulose digestion by post-ruminal microorganisms in goats

(2013) Jinzhen Jiao et al.   JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE

Rumen bacterial, archaeal, and fungal diversity of dairy cows in response to ingestion of lauric or myristic acid1

(2012) A. N. Hristov et al.   JOURNAL OF ANIMAL SCIENCE

Role of metabolic and cellular proliferation genes in ruminal development in response to enhanced plane of nutrition in neonatal Holstein calves1

(2012) A. Naeem et al.   JOURNAL OF DAIRY SCIENCE

Establishment of ruminal enzyme activities and fermentation capacity in dairy calves from birth through weaning

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Whole-genome sequence of Schistosoma haematobium

(2012) Neil D Young et al.   NATURE GENETICS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

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Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen

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Changes in Bacterial Diversity Associated with Epithelial Tissue in the Beef Cow Rumen during the Transition to a High-Grain Diet

(2011) Yanhong Chen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Characterization of the rumen microbiota of pre-ruminant calves using metagenomic tools

(2011) Robert W. Li et al.   ENVIRONMENTAL MICROBIOLOGY

Effects of chestnut tannins and coconut oil on growth performance, methane emission, ruminal fermentation, and microbial populations in sheep

(2011) H. Liu et al.   JOURNAL OF DAIRY SCIENCE

Effects of subacute ruminal acidosis challenges on fermentation and endotoxins in the rumen and hindgut of dairy cows

(2011) S. Li et al.   JOURNAL OF DAIRY SCIENCE

Comparative Genome Analysis of Prevotella ruminicola and Prevotella bryantii: Insights into Their Environmental Niche

(2010) Janaki Purushe et al.   MICROBIAL ECOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Dietary phytochemicals as rumen modifiers: a review of the effects on microbial populations

(2009) Amlan K. Patra et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

(2009) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of Real-Time PCR Technique in Studying Rumen Cellulolytic Bacteria Population as Affected by Level of Roughage in Swamp Buffalo

(2008) Metha Wanapat et al.   CURRENT MICROBIOLOGY

Aspects of rumen microbiology central to mechanistic modelling of methane production in cattle

(2008) J. L. ELLIS et al.   JOURNAL OF AGRICULTURAL SCIENCE

Effect of dietary starch on rumen and small intestine morphology and digesta pH in goats

(2008) Y.H. Wang et al.   Livestock Science

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

(2008) J. R. Cole et al.   NUCLEIC ACIDS RESEARCH

Calf Nutrition from Birth to Breeding

(2008) James K. Drackley   VETERINARY CLINICS OF NORTH AMERICA-FOOD ANIMAL PRACTICE

Plant extracts to manipulate rumen fermentation

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