Acidotolerant Bacteria and Fungi as a Sink of Methanol-Derived Carbon in a Deciduous Forest Soil

Emended description of the family Beijerinckiaceae and transfer of the genera Chelatococcus and Camelimonas to the family Chelatococcaceae fam. nov.

(2016) Svetlana N. Dedysh et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

(2015) Xiaoqing Wang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methylotrophs in natural habitats: current insights through metagenomics

(2015) Ludmila Chistoserdova   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

XoxFencoding an alternative methanol dehydrogenase is widespread in coastal marine environments

(2015) Martin Taubert et al.   ENVIRONMENTAL MICROBIOLOGY

Multiphyletic origins of methylotrophy in A lphaproteobacteria , exemplified by comparative genomics of Lake Washington isolates

(2015) David A. C. Beck et al.   ENVIRONMENTAL MICROBIOLOGY

PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference

(2014) Jan T. Keltjens et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Distribution and diversity ofVerrucomicrobiamethanotrophs in geothermal and acidic environments

(2014) Christine E. Sharp et al.   ENVIRONMENTAL MICROBIOLOGY

Descriptions of Roseiarcus fermentans gen. nov., sp. nov., a bacteriochlorophyll a-containing fermentative bacterium related phylogenetically to alphaproteobacterial methanotrophs, and of the family Roseiarcaceae fam. nov.

(2014) I. S. Kulichevskaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Agricultural soil and drilosphere as reservoirs of new and unusual assimilators of 2,4-dichlorophenol carbon

(2013) Anja Dallinger et al.   ENVIRONMENTAL MICROBIOLOGY

The (d)evolution of methanotrophy in the Beijerinckiaceae—a comparative genomics analysis

(2013) Ivica Tamas et al.   ISME Journal

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

The Methanol Dehydrogenase Gene, mxaF, as a Functional and Phylogenetic Marker for Proteobacterial Methanotrophs in Natural Environments

(2013) Evan Lau et al.   PLoS One

How Deep-Sea Wood Falls Sustain Chemosynthetic Life

(2013) Christina Bienhold et al.   PLoS One

Yeast and bacterial diversity along a transect in an acidic, As–Fe rich environment revealed by cultural approaches

(2013) François Delavat et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Prerequisites for amplicon pyrosequencing of microbial methanol utilizers in the environment

(2013) Steffen Kolb et al.   Frontiers in Microbiology

Quinone-dependent alcohol dehydrogenases and fad-dependent alcohol oxidases

(2012) A. R. Gvozdev et al.   BIOCHEMISTRY-MOSCOW

CD-HIT: accelerated for clustering the next-generation sequencing data

(2012) Limin Fu et al.   BIOINFORMATICS

Methanol oxidation by temperate soils and environmental determinants of associated methylotrophs

(2012) Astrid Stacheter et al.   ISME Journal

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Fast, accurate error-correction of amplicon pyrosequences using Acacia

(2012) Lauren Bragg et al.   NATURE METHODS

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Co-Consumption of Methanol and Succinate by Methylobacterium extorquens AM1

(2012) Rémi Peyraud et al.   PLoS One

Differences in Soil Fungal Communities between European Beech (Fagus sylvatica L.) Dominated Forests Are Related to Soil and Understory Vegetation

(2012) Tesfaye Wubet et al.   PLoS One

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Facultative methylotrophs from the human oral cavity and methylotrophy in strains of Gordonia, Leifsonia, and Microbacterium

(2011) Wei-Lian Hung et al.   ARCHIVES OF MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Genome-scale reconstruction and system level investigation of the metabolic network of Methylobacterium extorquens AM1

(2011) Rémi Peyraud et al.   BMC Systems Biology

Modularity of methylotrophy, revisited

(2011) Ludmila Chistoserdova   ENVIRONMENTAL MICROBIOLOGY

Methylorosula polaris gen. nov., sp. nov., an aerobic, facultatively methylotrophic psychrotolerant bacterium from tundra wetland soil

(2011) J. J. Berestovskaya et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea

(2011) Daniel PR Herlemann et al.   ISME Journal

Autotrophic Methanotrophy in Verrucomicrobia: Methylacidiphilum fumariolicumSolV Uses the Calvin-Benson-Bassham Cycle for Carbon Dioxide Fixation

(2011) A. F. Khadem et al.   JOURNAL OF BACTERIOLOGY

Molecular structure and gene analysis of Ce3+-induced methanol dehydrogenase of Bradyrhizobium sp. MAFF211645

(2011) Nanung Agus Fitriyanto et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

JAGUC — A SOFTWARE PACKAGE FOR ENVIRONMENTAL DIVERSITY ANALYSES

(2011) MARKUS E. NEBEL et al.   Journal of Bioinformatics and Computational Biology

Different Atmospheric Methane-Oxidizing Communities in European Beech and Norway Spruce Soils

(2010) D. M. Degelmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methyloferula stellata gen. nov., sp. nov., an acidophilic, obligately methanotrophic bacterium that possesses only a soluble methane monooxygenase

(2010) A. V. Vorobev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

A Systems Biology Approach Uncovers Cellular Strategies Used by Methylobacterium extorquens AM1 During the Switch from Multi- to Single-Carbon Growth

(2010) Elizabeth Skovran et al.   PLoS One

The importance and ecology of yeasts in soil

(2010) Alfred Botha   SOIL BIOLOGY & BIOCHEMISTRY

Update of the All-Species Living Tree Project based on 16S and 23S rRNA sequence analyses

(2010) Pablo Yarza et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Acetate utilization as a survival strategy of peat-inhabiting Methylocystis spp.

(2010) Svetlana E. Belova et al.   Environmental Microbiology Reports

The Expanding World of Methylotrophic Metabolism

(2009) Ludmila Chistoserdova et al.   Annual Review of Microbiology

Abundance of Novel and Diverse tfdA-Like Genes, Encoding Putative Phenoxyalkanoic Acid Herbicide-Degrading Dioxygenases, in Soil

(2009) A. Zaprasis et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Aerobic Vanillate Degradation and C1 Compound Metabolism in Bradyrhizobium japonicum

(2009) N. Sudtachat et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Methane oxidation kinetics differ in European beech and Norway spruce soils

(2009) D. M. Degelmann et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Impact of white-rot fungi on numbers and community composition of bacteria colonizing beech wood from forest soil

(2009) Larissa B. Folman et al.   FEMS MICROBIOLOGY ECOLOGY

Aerobic methanol-oxidizingBacteria in soil

(2009) Steffen Kolb   FEMS MICROBIOLOGY LETTERS

Methylovirgula ligni gen. nov., sp. nov., an obligately acidophilic, facultatively methylotrophic bacterium with a highly divergent mxaF gene

(2009) A. V. Vorob'ev et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ferrimicrobium acidiphilum gen. nov., sp. nov. and Ferrithrix thermotolerans gen. nov., sp. nov.: heterotrophic, iron-oxidizing, extremely acidophilic actinobacteria

(2009) D. B. Johnson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Mucilaginibacter gossypii sp. nov. and Mucilaginibacter gossypiicola sp. nov., plant-growth-promoting bacteria isolated from cotton rhizosphere soils

(2009) M. Madhaiyan et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

454 Pyrosequencing analyses of forest soils reveal an unexpectedly high fungal diversity

(2009) M. Buée et al.   NEW PHYTOLOGIST

Fungal Taxa Target Different Carbon Sources in Forest Soil

(2008) China A. Hanson et al.   ECOSYSTEMS

Novel methylotrophic bacteria isolated from the River Thames (London, UK)

(2008) Rich Boden et al.   ENVIRONMENTAL MICROBIOLOGY

Edaphobacter modestus gen. nov., sp. nov., and Edaphobacter aggregans sp. nov., acidobacteria isolated from alpine and forest soils

(2008) I. H. Koch et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Substrate-induced growth and isolation of Acidobacteria from acidic Sphagnum peat

(2008) Timofei A Pankratov et al.   ISME Journal

Characterization of a Novel Methanol Dehydrogenase in Representatives of Burkholderiales: Implications for Environmental Detection of Methylotrophy and Evidence for Convergent Evolution

(2008) M. G. Kalyuzhnaya et al.   JOURNAL OF BACTERIOLOGY

Comprehensive proteomics of Methylobacterium extorquens AM1 metabolism under single carbon and nonmethylotrophic conditions

(2008) Gundula Bosch et al.   PROTEOMICS