Microbial Diversity of Browning Peninsula, Eastern Antarctica Revealed Using Molecular and Cultivation Methods

Novel Culturing Techniques Select for Heterotrophs and Hydrocarbon Degraders in a Subantarctic Soil

(2016) J. M. van Dorst et al.   Scientific Reports

Geological connectivity drives microbial community structure and connectivity in polar, terrestrial ecosystems

(2015) Belinda C. Ferrari et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial diversity at Mitchell Peninsula, Eastern Antarctica: a potential biodiversity “hotspot”

(2015) Mukan Ji et al.   POLAR BIOLOGY

Malassezia Infections in Humans and Animals: Pathophysiology, Detection, and Treatment

(2015) Aristea Velegraki et al.   PLoS Pathogens

Antimicrobial activity and resistance to heavy metals and antibiotics of heterotrophic bacteria isolated from sediment and soil samples collected from two Antarctic islands

(2015) Iva Tomova et al.   Frontiers in Life Science

Diversity and structure of soil bacterial communities in the Fildes Region (maritime Antarctica) as revealed by 454 pyrosequencing

(2015) Neng Fei Wang et al.   Frontiers in Microbiology

Microbial community composition of transiently wetted Antarctic Dry Valley soils

(2015) Thomas D. Niederberger et al.   Frontiers in Microbiology

Highly Heterogeneous Soil Bacterial Communities around Terra Nova Bay of Northern Victoria Land, Antarctica

(2015) Mincheol Kim et al.   PLoS One

Culture-Dependent and -Independent Methods Capture Different Microbial Community Fractions in Hydrocarbon-Contaminated Soils

(2015) Franck O. P. Stefani et al.   PLoS One

Soil Microbial Responses to Increased Moisture and Organic Resources along a Salinity Gradient in a Polar Desert

(2014) David J. Van Horn et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Community fingerprinting in a sequencing world

(2014) Josie van Dorst et al.   FEMS MICROBIOLOGY ECOLOGY

The microbial ecology of permafrost

(2014) Janet K. Jansson et al.   NATURE REVIEWS MICROBIOLOGY

Bacterial Diversity Assessment in Antarctic Terrestrial and Aquatic Microbial Mats: A Comparison between Bidirectional Pyrosequencing and Cultivation

(2014) Bjorn Tytgat et al.   PLoS One

Soil fertility is associated with fungal and bacterial richness, whereas pH is associated with community composition in polar soil microbial communities

(2014) Steven D. Siciliano et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial ecology and biogeochemistry of continental Antarctic soils

(2014) Don A. Cowan et al.   Frontiers in Microbiology

Soil bacterial community composition altered by increased nutrient availability in Arctic tundra soils

(2014) Akihiro Koyama et al.   Frontiers in Microbiology

Diversity and bioprospecting of fungal communities associated with endemic and cold-adapted macroalgae in Antarctica

(2013) Valéria M Godinho et al.   ISME Journal

Predictable bacterial composition and hydrocarbon degradation in Arctic soils following diesel and nutrient disturbance

(2013) Terrence H Bell et al.   ISME Journal

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

(2013) Ross Overbeek et al.   NUCLEIC ACIDS RESEARCH

High Bacterial Diversity of Biological Soil Crusts in Water Tracks over Permafrost in the High Arctic Polar Desert

(2013) Blaire Steven et al.   PLoS One

Improved software detection and extraction of ITS1 and ITS2 from ribosomal ITS sequences of fungi and other eukaryotes for analysis of environmental sequencing data

(2013) Johan Bengtsson-Palme et al.   Methods in Ecology and Evolution

Capturing Greater 16S rRNA Gene Sequence Diversity within the Domain Bacteria

(2012) T. Winsley et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial culturomics: paradigm shift in the human gut microbiome study

(2012) J.-C. Lagier et al.   CLINICAL MICROBIOLOGY AND INFECTION

Abiotic factors influence microbial diversity in permanently cold soil horizons of a maritime-associated Antarctic Dry Valley

(2012) Francesca Stomeo et al.   FEMS MICROBIOLOGY ECOLOGY

Ancient fungi in Antarctic permafrost environments

(2012) Galina Kochkina et al.   FEMS MICROBIOLOGY ECOLOGY

Genome Sequence of Dyella japonica Strain A8, a Quorum-Quenching Bacterium That Degrades N-Acylhomoserine Lactones, Isolated from Malaysian Tropical Soil

(2012) J.-W. Chen et al.   JOURNAL OF BACTERIOLOGY

Rational Approaches to Improving the Isolation of Endophytic Actinobacteria from Australian Native Trees

(2012) Onuma Kaewkla et al.   MICROBIAL ECOLOGY

Evaluation of the ISO Standard 11063 DNA Extraction Procedure for Assessing Soil Microbial Abundance and Community Structure

(2012) Pierre Plassart et al.   PLoS One

Culturable bacteria community development in postglacial soils of Ecology Glacier, King George Island, Antarctica

(2012) Marek K. Zdanowski et al.   POLAR BIOLOGY

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soils Associated with Biotic Activity on Frost Boils in Arctic Alaska

(2012) G. J. Michaelson et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Distribution and drivers of ectomycorrhizal fungal communities across the North American Arctic

(2012) I. Timling et al.   Ecosphere

Culture-dependent and culture-independent diversity surveys target different bacteria: a case study in a freshwater sample

(2011) Ivone Vaz-Moreira et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

An arctic community of symbiotic fungi assembled by long-distance dispersers: phylogenetic diversity of ectomycorrhizal basidiomycetes in Svalbard based on soil and sporocarp DNA

(2011) József Geml et al.   JOURNAL OF BIOGEOGRAPHY

Estimating Biodiversity of Fungi in Activated Sludge Communities Using Culture-Independent Methods

(2011) Tegan N. Evans et al.   MICROBIAL ECOLOGY

Biodiversity of rock, beach and water fungi in Italy

(2011) S. Onofri et al.   PLANT BIOSYSTEMS

Target Region Selection Is a Critical Determinant of Community Fingerprints Generated by 16S Pyrosequencing

(2011) Purnima S. Kumar et al.   PLoS One

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Physical, chemical and microbial soil properties of frost boils at Browning Peninsula, Antarctica

(2011) Katherine J. Stewart et al.   POLAR BIOLOGY

Low-diversity fungal assemblage in an Antarctic Dry Valleys soil

(2011) Subramanya Rao et al.   POLAR BIOLOGY

Psychrotrophic microorganism communities in soils of Haswell Island, Antarctica, and their biosynthetic potential

(2011) V. Gesheva et al.   POLAR BIOLOGY

Searching for eukaryotic life preserved in Antarctic permafrost

(2011) L. Zucconi et al.   POLAR BIOLOGY

Culturable bacterial diversity at the Princess Elisabeth Station (Utsteinen, Sør Rondane Mountains, East Antarctica) harbours many new taxa

(2011) Karolien Peeters et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Recovering Greater Fungal Diversity from Pristine and Diesel Fuel Contaminated Sub-Antarctic Soil Through Cultivation Using Both a High and a Low Nutrient Media Approach

(2011) Belinda C. Ferrari et al.   Frontiers in Microbiology

Isolation and Physiology of Bacteria from Contaminated Subsurface Sediments

(2010) A. Bollmann et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Use of Ichip for High-Throughput In Situ Cultivation of "Uncultivable" Microbial Species

(2010) D. Nichols et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Ironing out the wrinkles in the rare biosphere through improved OTU clustering

(2010) Susan M. Huse et al.   ENVIRONMENTAL MICROBIOLOGY

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

On the rocks: the microbiology of Antarctic Dry Valley soils

(2010) S. Craig Cary et al.   NATURE REVIEWS MICROBIOLOGY

Antioxidant enzyme activity of filamentous fungi isolated from Livingston Island, Maritime Antarctica

(2010) S. Tosi et al.   POLAR BIOLOGY

Production of antibiotics and enzymes by soil microorganisms from the windmill islands region, Wilkes Land, East Antarctica

(2010) Victoria Gesheva   POLAR BIOLOGY

Distribution and abiotic influences on hypolithic microbial communities in an Antarctic Dry Valley

(2010) Don A. Cowan et al.   POLAR BIOLOGY

Distribution and abundance of soil fungi in Antarctica at sites on the Peninsula, Ross Sea Region and McMurdo Dry Valleys

(2010) B.E. Arenz et al.   SOIL BIOLOGY & BIOCHEMISTRY

Adaptation of extremely halotolerant black yeast Hortaea werneckii to increased osmolarity: a molecular perspective at a glance

(2010) A. Plemenitaš et al.   STUDIES IN MYCOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

DGGE fingerprinting of bacteria in soils from eight ecologically different sites around Casey Station, Antarctica

(2009) C. W. Chong et al.   POLAR BIOLOGY

Evaluation of the bacterial diversity in the feces of cattle using 16S rDNA bacterial tag-encoded FLX amplicon pyrosequencing (bTEFAP)

(2008) Scot E Dowd et al.   BMC MICROBIOLOGY

A trap for in situ cultivation of filamentous actinobacteria

(2008) Ekaterina Gavrish et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Cultivating previously uncultured soil bacteria using a soil substrate membrane system

(2008) Belinda C Ferrari et al.   Nature Protocols

NCBI BLAST: a better web interface

(2008) M. Johnson et al.   NUCLEIC ACIDS RESEARCH

Microbes on mountainsides: Contrasting elevational patterns of bacterial and plant diversity

(2008) J. A. Bryant et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

‘Decomposer’ Basidiomycota in Arctic and Antarctic ecosystems

(2007) Katherine E. Ludley et al.   SOIL BIOLOGY & BIOCHEMISTRY