Alterations in the Rumen Liquid-, Particle- and Epithelium-Associated Microbiota of Dairy Cows during the Transition from a Silage- and Concentrate-Based Ration to Pasture in Spring

Differential effects of monensin and a blend of essential oils on rumen microbiota composition of transition dairy cows

(2017) M. Schären et al.   JOURNAL OF DAIRY SCIENCE

The effects of a ration change from a total mixed ration to pasture on health and production of dairy cows

(2016) M. Schären et al.   JOURNAL OF DAIRY SCIENCE

The effects of a ration change from a total mixed ration to pasture on rumen fermentation, volatile fatty acid absorption characteristics, and morphology of dairy cows

(2016) M. Schären et al.   JOURNAL OF DAIRY SCIENCE

Rumen microbial community composition varies with diet and host, but a core microbiome is found across a wide geographical range

(2015) Gemma Henderson et al.   Scientific Reports

Redundancy, resilience, and host specificity of the ruminal microbiota: implications for engineering improved ruminal fermentations

(2015) Paul J. Weimer   Frontiers in Microbiology

Rumen Microbiome from Steers Differing in Feed Efficiency

(2015) Phillip R. Myer et al.   PLoS One

Prepartum and Postpartum Rumen Fluid Microbiomes: Characterization and Correlation with Production Traits in Dairy Cows

(2014) Fabio S. Lima et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fibrolytic Rumen Bacteria: Their Ecology and Functions

(2014) Satoshi Koike et al.   ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES

Microbial profiles of liquid and solid fraction associated biomaterial in buffalo rumen fed green and dry roughage diets by tagged 16S rRNA gene pyrosequencing

(2014) K. M. Singh et al.   MOLECULAR BIOLOGY REPORTS

Potential Role of the Bovine Rumen Microbiome in Modulating Milk Composition and Feed Efficiency

(2014) Elie Jami et al.   PLoS One

Relationship between the Rumen Microbiome and Residual Feed Intake-Efficiency of Brahman Bulls Stocked on Bermudagrass Pastures

(2014) Joshua C. McCann et al.   PLoS One

Changes in the Rumen Epimural Bacterial Diversity of Beef Cattle as Affected by Diet and Induced Ruminal Acidosis

(2013) R. M. Petri et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effect of DNA Extraction Methods and Sampling Techniques on the Apparent Structure of Cow and Sheep Rumen Microbial Communities

(2013) Gemma Henderson et al.   PLoS One

Similarity of the ruminal bacteria across individual lactating cows

(2012) Elie Jami et al.   ANAEROBE

Rumen microbial (meta)genomics and its application to ruminant production

(2012) D. P. Morgavi et al.   Animal

Effect of Phenotypic Residual Feed Intake and Dietary Forage Content on the Rumen Microbial Community of Beef Cattle

(2012) Ciara A. Carberry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Elevated CO2and drought stress effects on the chemical composition of maize plants, their ruminal fermentation and microbial diversityin vitro

(2012) Birgit Meibaum et al.   ARCHIVES OF ANIMAL NUTRITION

Nitrogen metabolism and rumen microbial enumeration in lactating cows with divergent residual feed intake fed high-digestibility pasture

(2012) A.G. Rius et al.   JOURNAL OF DAIRY SCIENCE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Composition, Diversity, and Origin of the Bacterial Community in Grass Carp Intestine

(2012) Shangong Wu et al.   PLoS One

Quantitative comparisons of select cultured and uncultured microbial populations in the rumen of cattle fed different diets

(2012) Minseok Kim et al.   Journal of Animal Science and Biotechnology

Impact of Feed Efficiency and Diet on Adaptive Variations in the Bacterial Community in the Rumen Fluid of Cattle

(2011) Emma Hernandez-Sanabria et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Prokaryotic taxonomy in the sequencing era - the polyphasic approach revisited

(2011) Peter Kämpfer et al.   ENVIRONMENTAL MICROBIOLOGY

Microbiome analysis of dairy cows fed pasture or total mixed ration diets

(2011) Alexandre B. de Menezes et al.   FEMS MICROBIOLOGY ECOLOGY

Correlation of Particular Bacterial PCR-Denaturing Gradient Gel Electrophoresis Patterns with Bovine Ruminal Fermentation Parameters and Feed Efficiency Traits

(2010) E. Hernandez-Sanabria et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis

(2010) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages

(2010) Yunhong Kong et al.   FEMS MICROBIOLOGY ECOLOGY

Genetic diversity and diet specificity of ruminal Prevotella revealed by 16S rRNA gene-based analysis

(2010) Aschalew Z. Bekele et al.   FEMS MICROBIOLOGY LETTERS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Bacterial diversity dynamics in rumen epithelium of wethers fed forage and mixed concentrate forage diets

(2010) S. Sadet-Bourgeteau et al.   VETERINARY MICROBIOLOGY

Diversity, abundance and novel 16S rRNA gene sequences of methanogens in rumen liquid, solid and epithelium fractions of Jinnan cattle

(2009) Cai-Xia Pei et al.   Animal

Assessment of the Microbial Ecology of Ruminal Methanogens in Cattle with Different Feed Efficiencies

(2009) M. Zhou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Effects of sampling location and time, and host animal on assessment of bacterial diversity and fermentation parameters in the bovine rumen

(2009) M. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Rumen Bacterial Diversity Dynamics Associated with Changing from Bermudagrass Hay to Grazed Winter Wheat Diets

(2009) Dipti W. Pitta et al.   MICROBIAL ECOLOGY

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

(2009) Jennifer M. Brulc et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency

(2008) Le Luo Guan et al.   FEMS MICROBIOLOGY LETTERS