Pan-Genomic Analysis Permits Differentiation of Virulent and Non-virulent Strains of Xanthomonas arboricola That Cohabit Prunus spp. and Elucidate Bacterial Virulence Factors

Using Ecology, Physiology, and Genomics to Understand Host Specificity inXanthomonas

(2016) Marie-Agnès Jacques et al.   Annual Review of Phytopathology

The Xanthomonas type IV pilus

(2016) German Dunger et al.   CURRENT OPINION IN MICROBIOLOGY

MultipleXanthomonas euvesicatoriaType III Effectors Inhibit flg22-Triggered Immunity

(2016) Georgy Popov et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The Type II Secreted Lipase/Esterase LesA is a Key Virulence Factor Required for Xylella fastidiosa Pathogenesis in Grapevines

(2016) Rafael Nascimento et al.   Scientific Reports

Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain

(2016) Jerson Garita-Cambronero et al.   Standards in Genomic Sciences

Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of Xanthomonas arboricola Reveals Insights into the Infection Process of Bacterial Spot Disease of Stone Fruits

(2016) Jerson Garita-Cambronero et al.   PLoS One

Multilocus Variable Number of Tandem Repeat Analysis Reveals Multiple Introductions in Spain of Xanthomonas arboricola pv. pruni, the Causal Agent of Bacterial Spot Disease of Stone Fruits and Almond

(2016) Pablo López-Soriano et al.   PLoS One

Aggressive Emerging Pathovars of Xanthomonas arboricola Represent Widespread Epidemic Clones Distinct from Poorly Pathogenic Strains, as Revealed by Multilocus Sequence Typing

(2015) Marion Fischer-Le Saux et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Phylogenetic and Variable-Number Tandem-Repeat Analyses Identify Nonpathogenic Xanthomonas arboricola Lineages Lacking the Canonical Type III Secretion System

(2015) Salwa Essakhi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

micropan: an R-package for microbial pan-genomics

(2015) Lars Snipen et al.   BMC BIOINFORMATICS

Evaluation of a real-time PCR and a loop-mediated isothermal amplification for detection of Xanthomonas arboricola pv. pruni in plant tissue samples

(2015) Ana Palacio-Bielsa et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comparative genomics of a cannabis pathogen reveals insight into the evolution of pathogenicity in Xanthomonas

(2015) Jonathan M. Jacobs et al.   Frontiers in Plant Science

Comparative Genomics of Pathogenic and Nonpathogenic Strains of Xanthomonas arboricola Unveil Molecular and Evolutionary Events Linked to Pathoadaptation

(2015) Sophie Cesbron et al.   Frontiers in Plant Science

T346Hunter: A Novel Web-Based Tool for the Prediction of Type III, Type IV and Type VI Secretion Systems in Bacterial Genomes

(2015) Pedro Manuel Martínez-García et al.   PLoS One

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Xanthomonas citrisubsp.citriType IV Pilus Is Required for Twitching Motility, Biofilm Development, and Adherence

(2014) German Dunger et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

CDD: NCBI's conserved domain database

(2014) Aron Marchler-Bauer et al.   NUCLEIC ACIDS RESEARCH

Key components of the eight classes of type IV secretion systems involved in bacterial conjugation or protein secretion

(2014) Julien Guglielmini et al.   NUCLEIC ACIDS RESEARCH

Xanthomonas arboricolaDiseases of Stone Fruit, Almond, and Walnut Trees: Progress Toward Understanding and Management

(2014) Jay Ram Lamichhane   PLANT DISEASE

Identification of a putative cognate sensor kinase for the two-component response regulator HrpG, a key regulator controlling the expression of thehrpgenes inXanthomonas campestrispv.campestris

(2013) Rui-Fang Li et al.   ENVIRONMENTAL MICROBIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Xanthomonas arboricoladisease of hazelnut: current status and future perspectives for its management

(2013) J. R. Lamichhane et al.   PLANT PATHOLOGY

Xanthomonas arboricolapv.fragariae: what's in a name?

(2013) J. Vandroemme et al.   PLANT PATHOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Type Three Effector Gene Distribution and Sequence Analysis Provide New Insights into the Pathogenicity of Plant-Pathogenic Xanthomonas arboricola

(2011) Ahmed Hajri et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads

(2011) Nadia Mhedbi-Hajri et al.   BMC EVOLUTIONARY BIOLOGY

Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper

(2011) Neha Potnis et al.   BMC GENOMICS

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

The ubiquitous plasmid pXap41 in the invasive phytopathogen Xanthomonas arboricola pv. pruni: complete sequence and comparative genomic analysis

(2011) Joël F. Pothier et al.   FEMS MICROBIOLOGY LETTERS

A duplex-PCR method for species- and pathovar-level identification and detection of the quarantine plant pathogen Xanthomonas arboricola pv. pruni

(2011) J.F. Pothier et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Selection of a Cutoff Value for Real-Time Polymerase Chain Reaction Results to Fit a Diagnostic Purpose: Analytical and Epidemiologic Approaches

(2011) Charles G. B. Caraguel et al.   JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION

HrpG and HrpX Play Global Roles in Coordinating Different Virulence Traits ofXanthomonas axonopodispv.citri

(2011) Yinping Guo et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Pathogenomics of Xanthomonas: understanding bacterium–plant interactions

(2011) Robert P. Ryan et al.   NATURE REVIEWS MICROBIOLOGY

Development of a Bio-PCR Protocol for the Detection ofXanthomonas arboricolapv.pruni

(2011) E. L. Ballard et al.   PLANT DISEASE

Involvement of Type IV Pili in Pathogenicity of Plant Pathogenic Bacteria

(2011) Saul Burdman et al.   Genes

Development of an Efficient Real-Time Quantitative PCR Protocol for Detection ofXanthomonas arboricolapv. pruni inPrunusSpecies

(2010) Ana Palacio-Bielsa et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Detection of Xanthomonas arboricola pv. pruni by PCR using primers based on DNA sequences related to the hrp genes

(2010) So Yeon Park et al.   JOURNAL OF MICROBIOLOGY

Functional characterization of the Xcs and Xps type II secretion systems from the plant pathogenic bacterium Xanthomonas campestris pv vesicatoria

(2010) Robert Szczesny et al.   NEW PHYTOLOGIST

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Standard operating procedure for computing pangenome trees

(2010) Lars Snipen et al.   Standards in Genomic Sciences

The type III effectors ofXanthomonas

(2009) FRANK F. WHITE et al.   MOLECULAR PLANT PATHOLOGY

The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis

(2008) Frank-Jörg Vorhölter et al.   JOURNAL OF BIOTECHNOLOGY

TwoXanthomonasExtracellular Polygalacturonases, PghAxc and PghBxc, Are Regulated by Type III Secretion Regulators HrpX and HrpG and Are Required for Virulence

(2008) Lifeng Wang et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Coordinating assembly of a bacterial macromolecular machine

(2008) Fabienne F. V. Chevance et al.   NATURE REVIEWS MICROBIOLOGY

Phylogeny-Aware Gap Placement Prevents Errors in Sequence Alignment and Evolutionary Analysis

(2008) A. Loytynoja et al.   SCIENCE

A multilocus sequence analysis of the genus Xanthomonas

(2008) J.M. Young et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY