Response of Methanogenic Microbial Communities to Desiccation Stress in Flooded and Rain-Fed Paddy Soil from Thailand

Structure and function of methanogenic microbial communities in soils from flooded rice and upland soybean fields from Sanjiang plain, NE China

(2017) Marcela Hernández et al.   SOIL BIOLOGY & BIOCHEMISTRY

Structure and function of methanogenic microbial communities in sediments of Amazonian lakes with different water types

(2016) Yang Ji et al.   ENVIRONMENTAL MICROBIOLOGY

Chasing the elusive Euryarchaeota class WSA2: genomes reveal a uniquely fastidious methyl-reducing methanogen

(2016) Masaru Konishi Nobu et al.   ISME Journal

High occurrence of Pacearchaeota and Woesearchaeota (Archaea superphylum DPANN) in the surface waters of oligotrophic high-altitude lakes

(2016) Rudiger Ortiz-Alvarez et al.   Environmental Microbiology Reports

Microbial Community Structure in the Rhizosphere of Rice Plants

(2016) Björn Breidenbach et al.   Frontiers in Microbiology

Different Bacterial Populations Associated with the Roots and Rhizosphere of Rice Incorporate Plant-Derived Carbon

(2015) Marcela Hernández et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatiotemporal variation of planktonic and sediment bacterial assemblages in two plateau freshwater lakes at different trophic status

(2015) Yu Dai et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Genomic Expansion of Domain Archaea Highlights Roles for Organisms from New Phyla in Anaerobic Carbon Cycling

(2015) Cindy J. Castelle et al.   CURRENT BIOLOGY

Crop rotation of flooded rice with upland maize impacts the resident and active methanogenic microbial community

(2015) Björn Breidenbach et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial community dynamics during the early stages of plant polymer breakdown in paddy soil

(2015) Carl-Eric Wegner et al.   ENVIRONMENTAL MICROBIOLOGY

Differential Assemblage of Functional Units in Paddy Soil Microbiomes

(2015) Yongkyu Kim et al.   PLoS One

Methane metabolism in the archaeal phylum Bathyarchaeota revealed by genome-centric metagenomics

(2015) P. N. Evans et al.   SCIENCE

Functional and structural responses of methanogenic microbial communities in Uruguayan soils to intermittent drainage

(2015) Yang Ji et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative genomics of threeMethanocellalesstrains reveal novel taxonomic and metabolic features

(2015) Zhe Lyu et al.   Environmental Microbiology Reports

High resolution depth distribution of Bacteria, Archaea, methanotrophs, and methanogens in the bulk and rhizosphere soils of a flooded rice paddy

(2015) Hyo Jung Lee et al.   Frontiers in Microbiology

Seasonal dynamics of bacterial and archaeal methanogenic communities in flooded rice fields and effect of drainage

(2015) Björn Breidenbach et al.   Frontiers in Microbiology

Distribution of sediment bacterial and archaeal communities in plateau freshwater lakes

(2014) Jingxu Zhang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Effect of Paddy-Upland Rotation on Methanogenic Archaeal Community Structure in Paddy Field Soil

(2014) Dongyan Liu et al.   MICROBIAL ECOLOGY

Stable carbon isotope biogeochemistry of propionate and acetate in methanogenic soils and lake sediments

(2014) R. Conrad et al.   ORGANIC GEOCHEMISTRY

Endospore-enriched sequencing approach reveals unprecedented diversity ofFirmicutesin sediments

(2014) Tina Wunderlin et al.   Environmental Microbiology Reports

Structure and function of the methanogenic microbial communities in Uruguayan soils shifted between pasture and irrigated rice fields

(2013) Ana Fernandez Scavino et al.   ENVIRONMENTAL MICROBIOLOGY

Response of the methanogenic microbial communities in Amazonian oxbow lake sediments to desiccation stress

(2013) Ralf Conrad et al.   ENVIRONMENTAL MICROBIOLOGY

Differentiation between sediment and hypolimnion methanogen communities in humic lakes

(2013) Nicholas D. Youngblut et al.   ENVIRONMENTAL MICROBIOLOGY

Elucidating the microbial resuscitation cascade in biological soil crusts following a simulated rain event

(2013) Roey Angel et al.   ENVIRONMENTAL MICROBIOLOGY

Bacterial community variations in an alfalfa-rice rotation system revealed by 16S rRNA gene 454-pyrosequencing

(2013) Ana R. Lopes et al.   FEMS MICROBIOLOGY ECOLOGY

Phylogenomic Data Support a Seventh Order of Methylotrophic Methanogens and Provide Insights into the Evolution of Methanogenesis

(2013) Guillaume Borrel et al.   Genome Biology and Evolution

Seasonal Transition of Active Bacterial and Archaeal Communities in Relation to Water Management in Paddy Soils

(2013) Hideomi Itoh et al.   MICROBES AND ENVIRONMENTS

Pyrosequencing Reveals Contrasting Soil Bacterial Diversity and Community Structure of Two Main Winter Wheat Cropping Systems in China

(2013) Jun Zhao et al.   MICROBIAL ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

“Methanoplasmatales,” Thermoplasmatales-Related Archaea in Termite Guts and Other Environments, Are the Seventh Order of Methanogens

(2012) Kristina Paul et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial succession during 500 years of soil development under agricultural use

(2012) Jun Cui et al.   ECOLOGICAL RESEARCH

Characterization of the bacterial and archaeal communities in rice field soils subjected to long-term fertilization practices

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Methanogenesis pathways in a stratified eutrophic alpine lake (Lake Bled, Slovenia)

(2012) Ines Mandic-Mulec et al.   LIMNOLOGY AND OCEANOGRAPHY

Effect of long-term free-air CO2 enrichment on the diversity and activity of soil methanogens in a periodically waterlogged grassland

(2012) Roey Angel et al.   SOIL BIOLOGY & BIOCHEMISTRY

Responses of MethanogenmcrAGenes and Their Transcripts to an Alternate Dry/Wet Cycle of Paddy Field Soil

(2011) Ke Ma et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Different crop rotation systems as drivers of change in soil bacterial community structure and yield of rice, Oryza sativa

(2011) Do Thi Xuan et al.   BIOLOGY AND FERTILITY OF SOILS

Methanogenic archaea are globally ubiquitous in aerated soils and become active under wet anoxic conditions

(2011) Roey Angel et al.   ISME Journal

Activation of Methanogenesis in Arid Biological Soil Crusts Despite the Presence of Oxygen

(2011) Roey Angel et al.   PLoS One

Transcriptional response of methanogenmcrAgenes to oxygen exposure of rice field soil

(2011) Yanli Yuan et al.   Environmental Microbiology Reports

Bacterial Communities Associated with the Lichen Symbiosis

(2010) Scott T. Bates et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Stable isotope fractionation during the methanogenic degradation of organic matter in the sediment of an acidic bog lake, Lake Grosse Fuchskuhle

(2010) Ralf Conrad et al.   LIMNOLOGY AND OCEANOGRAPHY

Succession of Bacterial Populations during Plant Residue Decomposition in Rice Field Soil

(2009) J. Rui et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil

(2008) J. Peng et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transcriptional activity of paddy soil bacterial communities

(2008) Pravin Malla Shrestha et al.   ENVIRONMENTAL MICROBIOLOGY