Evolution of Stenotrophomonas maltophilia in Cystic Fibrosis Lung over Chronic Infection: A Genomic and Phenotypic Population Study

Stenotrophomonas maltophilia healthcare-associated infections: identification of two main pathogenic genetic backgrounds

(2017) C. Corlouer et al.   JOURNAL OF HOSPITAL INFECTION

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods

(2016) Marta Nascimento et al.   BIOINFORMATICS

Gene flow, recombination, and positive selection in Stenotrophomonas maltophilia: mechanisms underlying the diversity of the widespread opportunistic pathogen

(2016) Dong Yu et al.   GENOME

CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database

(2016) Baofeng Jia et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Oxidative Stress Markers in Sputum

(2016) Balazs Antus   Oxidative Medicine and Cellular Longevity

Pseudomonas aeruginosa Evolutionary Adaptation and Diversification in Cystic Fibrosis Chronic Lung Infections

(2016) Craig Winstanley et al.   TRENDS IN MICROBIOLOGY

Stenotrophomonas maltophilia Phenotypic and Genotypic Diversity during a 10-year Colonization in the Lungs of a Cystic Fibrosis Patient

(2016) Arianna Pompilio et al.   Frontiers in Microbiology

Roary: rapid large-scale prokaryote pan genome analysis

(2015) Andrew J. Page et al.   BIOINFORMATICS

micropan: an R-package for microbial pan-genomics

(2015) Lars Snipen et al.   BMC BIOINFORMATICS

Comparative genomics and biological characterization of sequential Pseudomonas aeruginosa isolates from persistent airways infection

(2015) Irene Bianconi et al.   BMC GENOMICS

An overview of various typing methods for clinical epidemiology of the emerging pathogen Stenotrophomonas maltophilia

(2015) Giovanni Gherardi et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Comparative Genomics of Environmental and ClinicalStenotrophomonas maltophiliaStrains with Different Antibiotic Resistance Profiles

(2015) Benjamin Youenou et al.   Genome Biology and Evolution

Emerging bacterial pathogens and changing concepts of bacterial pathogenesis in cystic fibrosis

(2015) Michael D. Parkins et al.   Journal of Cystic Fibrosis

Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection

(2015) Sophie E. Darch et al.   Scientific Reports

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

Cooperative pathogenicity in cystic fibrosis: Stenotrophomonas maltophilia modulates Pseudomonas aeruginosa virulence in mixed biofilm

(2015) Arianna Pompilio et al.   Frontiers in Microbiology

Comparative genomics of non-pseudomonal bacterial species colonising paediatric cystic fibrosis patients

(2015) Kate L. Ormerod et al.   PeerJ

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Activity of colistin in combination with tigecycline or rifampicin against multidrug-resistant Stenotrophomonas maltophilia

(2014) J. W. Betts et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Adaptation of Stenotrophomonas maltophilia in cystic fibrosis: Molecular diversity, mutation frequency and antibiotic resistance

(2014) P.G. Vidigal et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Cystic fibrosis airway secretions exhibit mucin hyperconcentration and increased osmotic pressure

(2014) Ashley G. Henderson et al.   JOURNAL OF CLINICAL INVESTIGATION

Strain-specific parallel evolution drives short-term diversification during Pseudomonas aeruginosa biofilm formation

(2014) K. E. McElroy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Environmental Heterogeneity Drives Within-Host Diversification and Evolution of Pseudomonas aeruginosa

(2014) T. Markussen et al.   mBio

Chronic Stenotrophomonas maltophilia infection and mortality or lung transplantation in cystic fibrosis patients

(2013) Valerie Waters et al.   Journal of Cystic Fibrosis

Antimicrobial Susceptibility of Stenotrophomonas maltophilia Isolates from Korea, and the Activity of Antimicrobial Combinations against the Isolates

(2013) Hae-Sun Chung et al.   JOURNAL OF KOREAN MEDICAL SCIENCE

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Stenotrophomonas maltophiliain Cystic Fibrosis

(2011) Andrew A. Colin et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Stenotrophomonas interspecies differentiation and identification by gyrB sequence analysis

(2011) Liselott A. Svensson-Stadler et al.   FEMS MICROBIOLOGY LETTERS

Chronic Pseudomonas aeruginosa infection definition: EuroCareCF Working Group report

(2011) T. Pressler et al.   Journal of Cystic Fibrosis

Stenotrophomonas maltophiliain Cystic Fibrosis

(2010) Valerie Waters et al.   AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE

Antimicrobial Susceptibilities of a Worldwide Collection of Stenotrophomonas maltophilia Isolates Tested against Tigecycline and Agents Commonly Used for S. maltophilia Infections

(2010) D. J. Farrell et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Polymorphic Mutation Frequencies of Clinical and Environmental Stenotrophomonas maltophilia Populations

(2010) M. C. Turrientes et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Adhesion to and biofilm formation on IB3-1 bronchial cells by Stenotrophomonas maltophilia isolates from cystic fibrosis patients

(2010) Arianna Pompilio et al.   BMC MICROBIOLOGY

Role of Excessive Inflammatory Response to Stenotrophomonas maltophilia Lung Infection in DBA/2 Mice and Implications for Cystic Fibrosis

(2010) G. Di Bonaventura et al.   INFECTION AND IMMUNITY

Comparative genomics: the bacterial pan-genome

(2008) Hervé Tettelin et al.   CURRENT OPINION IN MICROBIOLOGY

Factors associated with adherence to and biofilm formation on polystyrene byStenotrophomonas maltophilia: the role of cell surface hydrophobicity and motility

(2008) Arianna Pompilio et al.   FEMS MICROBIOLOGY LETTERS