Gene flow, recombination, and positive selection in Stenotrophomonas maltophilia: mechanisms underlying the diversity of the widespread opportunistic pathogen

Overview of molecular typing methods for outbreak detection and epidemiological surveillance

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Virulence genes in clinical and environmental Stenotrophomas maltophilia isolates: A genome sequencing and gene expression approach

(2014) Martina Adamek et al.   MICROBIAL PATHOGENESIS

Homologous Recombination Drives Both Sequence Diversity and Gene Content Variation in Neisseria meningitidis

(2013) Ying Kong et al.   Genome Biology and Evolution

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Stenotrophomonas maltophilia: an Emerging Global Opportunistic Pathogen

(2012) J. S. Brooke   CLINICAL MICROBIOLOGY REVIEWS

Gene gain and loss events in Rickettsia and Orientia species

(2011) Kalliopi Georgiades et al.   Biology Direct

Genome-wide evidence for positive selection and recombination in Actinobacillus pleuropneumoniae

(2011) Zhuofei Xu et al.   BMC EVOLUTIONARY BIOLOGY

WebMGA: a customizable web server for fast metagenomic sequence analysis

(2011) Sitao Wu et al.   BMC GENOMICS

Phenotypic and genotypic characterization of Stenotrophomonas maltophilia isolates from patients with cystic fibrosis: Genome diversity, biofilm formation, and virulence

(2011) Arianna Pompilio et al.   BMC MICROBIOLOGY

Recombination and positive selection contributed to the evolution of Listeria monocytogenes lineages III and IV, two distinct and well supported uncommon L. monocytogenes lineages

(2011) Yeu-Harn Lucy Tsai et al.   INFECTION GENETICS AND EVOLUTION

Genotyping of Environmental and Clinical Stenotrophomonas maltophilia Isolates and their Pathogenic Potential

(2011) Martina Adamek et al.   PLoS One

Widespread homologous recombination within and between Streptomyces species

(2010) James R Doroghazi et al.   ISME Journal

Reassessment of Stenotrophomonas maltophilia Phenotype

(2010) L. A. Carmody et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genome wide evolutionary analyses reveal serotype specific patterns of positive selection in selected Salmonella serotypes

(2009) Yeşim Soyer et al.   BMC EVOLUTIONARY BIOLOGY

Pervasive, genome-wide positive selection leading to functional divergence in the bacterial genus Campylobacter

(2009) T. Lefebure et al.   GENOME RESEARCH

Stenotrophomonas maltophilia genomes: A start-up comparison

(2009) Francesco Rocco et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

Organised Genome Dynamics in the Escherichia coli Species Results in Highly Diverse Adaptive Paths

(2009) Marie Touchon et al.   PLoS Genetics

Genome-wide analyses reveal lineage specific contributions of positive selection and recombination to the evolution of Listeria monocytogenes

(2008) Renato H Orsi et al.   BMC EVOLUTIONARY BIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS

Heavy Metal Tolerance in Stenotrophomonas maltophilia

(2008) Delphine Pages et al.   PLoS One

The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants

(2008) Lisa C Crossman et al.   GENOME BIOLOGY