Evaluation of Molecular Methods for the Detection and Quantification of Pathogen-Derived Nucleic Acids in Sediment

Digital RT-PCR method for hepatitis A virus and norovirus quantification in soft berries

(2017) Audrey Fraisse et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Technical aspects of using human adenovirus as a viral water quality indicator

(2016) Emily Rames et al.   WATER RESEARCH

Animal and human enteric viruses in water and sediment samples from dairy farms

(2015) Rodrigo Staggemeier et al.   AGRICULTURAL WATER MANAGEMENT

Automated Sampling Procedures Supported by High Persistence of Bacterial Fecal Indicators and Bacteroidetes Genetic Microbial Source Tracking Markers in Municipal Wastewater during Short-Term Storage at 5°C

(2015) R. E. Mayer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

A comparative study of digital RT-PCR and RT-qPCR for quantification of Hepatitis A virus and Norovirus in lettuce and water samples

(2015) Coralie Coudray-Meunier et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Size exclusion-based purification and PCR-based quantitation of MS2 bacteriophage particles for environmental applications

(2015) Kata Farkas et al.   JOURNAL OF VIROLOGICAL METHODS

Molecular detection of human adenovirus in sediment using a direct detection method compared to the classical polyethylene glycol precipitation

(2015) Rodrigo Staggemeier et al.   JOURNAL OF VIROLOGICAL METHODS

Designing and Implementing an Assay for the Detection of Rare and Divergent NRPS and PKS Clones in European, Antarctic and Cuban Soils

(2015) Gregory C. A. Amos et al.   PLoS One

Widespread Environmental Contamination with Mycobacterium tuberculosis Complex Revealed by a Molecular Detection Protocol

(2015) Nuno Santos et al.   PLoS One

Microfluidic Quantitative PCR for Simultaneous Quantification of Multiple Viruses in Environmental Water Samples

(2014) Satoshi Ishii et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

New trends in food- and waterborne viral outbreaks

(2014) Dragoslava Radin   Archives of Biological Sciences

Comparison of next-generation droplet digital PCR (ddPCR) with quantitative PCR (qPCR) for enumeration of Cryptosporidium oocysts in faecal samples

(2014) Rongchang Yang et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Effectiveness of cooking to reduce Norovirus and infectious F-specific RNA bacteriophage concentrations inMytilus edulis

(2014) J. Flannery et al.   JOURNAL OF APPLIED MICROBIOLOGY

Evaluation of detachment methods for the enumeration ofBacteroides fragilisin sediments via propidium monoazide quantitative PCR, in comparison withEnterococcus faecalisandEscherichia coli

(2014) M. Kim et al.   JOURNAL OF APPLIED MICROBIOLOGY

Occurrence and distribution ofVibrio vulnificusandVibrio parahaemolyticus- potential roles for fish, oyster, sediment and water

(2014) C.E. Givens et al.   LETTERS IN APPLIED MICROBIOLOGY

Sediment Composition Influences Spatial Variation in the Abundance of Human Pathogen Indicator Bacteria within an Estuarine Environment

(2014) Tracy L. Perkins et al.   PLoS One

Thirty years of viable but nonculturable state research: Unsolved molecular mechanisms

(2013) Daniela Pinto et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Epidemic Escherichia coli ST131 and Enterococcus faecium ST17 in Coastal Marine Sediments from an Italian Beach

(2013) C. Vignaroli et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Evaluation of commercial kits for the extraction and purification of viral nucleic acids from environmental and fecal samples

(2013) Brandon C. Iker et al.   JOURNAL OF VIROLOGICAL METHODS

Two-Year Systematic Study To Assess Norovirus Contamination in Oysters from Commercial Harvesting Areas in the United Kingdom

(2012) James A. Lowther et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Viral diagnostics in the era of digital polymerase chain reaction

(2012) Ruth Hall Sedlak et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Evaluation of four virus recovery methods for detecting noroviruses on fresh lettuce, sliced ham, and frozen raspberries

(2012) Maija Summa et al.   JOURNAL OF VIROLOGICAL METHODS

Molecular quantification of environmental DNA using microfluidics and digital PCR

(2012) Tatsuhiko Hoshino et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Assessment of sources of human pathogens and fecal contamination in a Florida freshwater lake

(2012) Christopher Staley et al.   WATER RESEARCH

Concentration and Recovery of Viruses from Water: A Comprehensive Review

(2012) Luisa A. Ikner et al.   Food and Environmental Virology

Development of an Effective Method for Recovery of Viral Genomic RNA from Environmental Silty Sediments for Quantitative Molecular Detection

(2011) Takayuki Miura et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Review: Norovirus prevalence in Belgian, Canadian and French fresh produce: A threat to human health?

(2011) L. Baert et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Reservoirs of Cyprinid herpesvirus 3 (CyHV-3) DNA in sediments of natural lakes and ponds

(2011) Mie N. Honjo et al.   VETERINARY MICROBIOLOGY

Quantification and Genotyping of Human Sapoviruses in the Llobregat River Catchment, Spain

(2010) Daisuke Sano et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

PCR Inhibitor Levels in Concentrates of Biosolid Samples Predicted by a New Method Based on Excitation-Emission Matrix Spectroscopy

(2010) C. Rock et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial contamination and purification of bivalve shellfish: Crucial aspects in monitoring and future perspectives – A mini-review

(2010) J. Oliveira et al.   FOOD CONTROL

Molecular detection of pathogens in water – The pros and cons of molecular techniques

(2010) Rosina Girones et al.   WATER RESEARCH

International Standardisation of a Method for Detection of Human Pathogenic Viruses in Molluscan Shellfish

(2010) David Lees et al.   Food and Environmental Virology

Comparative assessment of human and farm animal faecal microbiota using real-time quantitative PCR

(2009) Jean-Pierre Furet et al.   FEMS MICROBIOLOGY ECOLOGY

The feline calicivirus as a sample process control for the detection of food and waterborne RNA viruses

(2009) Kirsten Mattison et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Assessment of the stability of human viruses and coliphage in groundwater by PCR and infectivity methods

(2009) K.J. Charles et al.   JOURNAL OF APPLIED MICROBIOLOGY

Benthic ecology of Vibrio spp. and pathogenic Vibrio species in a coastal Mediterranean environment (La Spezia Gulf, Italy)

(2009) Luigi Vezzulli et al.   MICROBIAL ECOLOGY

Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide

(2009) Sungwoo Bae et al.   WATER RESEARCH

Application of real-time PCR assays to genotyping of F-specific phages in river water and sediments in Japan

(2009) Eiji Haramoto et al.   WATER RESEARCH

Detection and Quantification of Noroviruses in Shellfish

(2008) F. S. Le Guyader et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Temperature inactivation of Feline calicivirus vaccine strain FCV F-9 in comparison with human noroviruses using an RNA exposure assay and reverse transcribed quantitative real-time polymerase chain reaction—A novel method for predicting virus infectivity

(2008) J.R. Topping et al.   JOURNAL OF VIROLOGICAL METHODS