Evolutionary routes to biochemical innovation revealed by integrative analysis of a plant-defense related specialized metabolic pathway

Profiling, isolation and structure elucidation of specialized acylsucrose metabolites accumulating in trichomes of Petunia species

(2017) Xiaoxiao Liu et al.   Metabolomics

A Global Coexpression Network Approach for Connecting Genes to Specialized Metabolic Pathways in Plants

(2017) Jennifer H. Wisecaver et al.   PLANT CELL

Characterization of Trichome-Expressed BAHD Acyltransferases in Petunia axillaris Reveals Distinct Acylsugar Assembly Mechanisms within the Solanaceae

(2017) Satya Swathi Nadakuduti et al.   PLANT PHYSIOLOGY

O- Acyl Sugars Protect a Wild Tobacco from Both Native Fungal Pathogens and a Specialist Herbivore

(2017) Van Thi Luu et al.   PLANT PHYSIOLOGY

Eocene lantern fruits from Gondwanan Patagonia and the early origins of Solanaceae

(2017) Peter Wilf et al.   SCIENCE

Introgression of acylsugar chemistry QTL modifies the composition and structure of acylsugars produced by high-accumulating tomato lines

(2016) John R. Smeda et al.   MOLECULAR BREEDING

Natural variability in acyl moieties of sugar esters produced by certain tobacco and other Solanaceae species

(2016) Antoaneta B.M. Kroumova et al.   PHYTOCHEMISTRY

Glucosinolate diversity within a phylogenetic framework of the tribe Cardamineae (Brassicaceae) unraveled with HPLC-MS/MS and NMR-based analytical distinction of 70 desulfoglucosinolates

(2016) Carl Erik Olsen et al.   PHYTOCHEMISTRY

Solanum pennelliibackcross inbred lines (BILs) link small genomic bins with tomato traits

(2016) Itai Ofner et al.   PLANT JOURNAL

Illuminating a plant’s tissue-specific metabolic diversity using computational metabolomics and information theory

(2016) Dapeng Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of herbivore-induced early defense signaling was shaped by genome-wide duplications in Nicotiana

(2016) Wenwu Zhou et al.   eLife

Differential and Synergistic Functionality of Acylsugars in Suppressing Oviposition by Insect Herbivores

(2016) Brian M. Leckie et al.   PLoS One

Survey of genome sequences in a wild sweet potato, Ipomoea trifida (H. B. K.) G. Don

(2015) H. Hirakawa et al.   DNA RESEARCH

Reconstructing the chemical diversity of labdane-type diterpene biosynthesis in yeast

(2015) Codruta Ignea et al.   METABOLIC ENGINEERING

Lineage-specific gene radiations underlie the evolution of novel betalain pigmentation in Caryophyllales

(2015) Samuel F. Brockington et al.   NEW PHYTOLOGIST

Plant betalains: Chemistry and biochemistry

(2015) Mohammad Imtiyaj Khan et al.   PHYTOCHEMISTRY

Functionally Divergent Alleles and Duplicated Loci Encoding an Acyltransferase Contribute to Acylsugar Metabolite Diversity inSolanumTrichomes

(2015) Anthony L. Schilmiller et al.   PLANT CELL

A feedback insensitive isopropylmalate synthase affects acylsugar composition in cultivated and wild tomato

(2015) jing ning et al.   PLANT PHYSIOLOGY

Something old, something new: Conserved enzymes and the evolution of novelty in plant specialized metabolism

(2015) Gaurav Moghe et al.   PLANT PHYSIOLOGY

In vitro reconstruction and analysis of evolutionary variation of the tomato acylsucrose metabolic network

(2015) Pengxiang Fan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The butterfly plant arms-race escalated by gene and genome duplications

(2015) Patrick P. Edger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Natural genetic variation in Arabidopsis thaliana defense metabolism genes modulates field fitness

(2015) Rachel Kerwin et al.   eLife

Phylogeny of Lamiidae

(2014) Nancy F. Refulio-Rodriguez et al.   AMERICAN JOURNAL OF BOTANY

Consequences of Whole-Genome Triplication as Revealed by Comparative Genomic Analyses of the Wild Radish Raphanus raphanistrum and Three Other Brassicaceae Species

(2014) G. D. Moghe et al.   PLANT CELL

Investigation of terpene diversification across multiple sequenced plant genomes

(2014) Alexander M. Boutanaev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments

(2013) Ning Leng et al.   BIOINFORMATICS

A phylogenetic framework for evolutionary study of the nightshades (Solanaceae): a dated 1000-tip tree

(2013) Tiina Särkinen et al.   BMC EVOLUTIONARY BIOLOGY

Whole Genome and Tandem Duplicate Retention Facilitated Glucosinolate Pathway Diversification in the Mustard Family

(2013) Johannes A. Hofberger et al.   Genome Biology and Evolution

Comparative structural profiling of trichome specialized metabolites in tomato (Solanum lycopersicum) and S. habrochaites: acylsugar profiles revealed by UHPLC/MS and NMR

(2013) Banibrata Ghosh et al.   Metabolomics

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Evolution of Homospermidine Synthase in the Convolvulaceae: A Story of Gene Duplication, Gene Loss, and Periods of Various Selection Pressures

(2013) E. Kaltenegger et al.   PLANT CELL

Phylogenomics of the benzoxazinoid biosynthetic pathway of Poaceae: gene duplications and origin of the Bx cluster

(2012) Leslie Dutartre et al.   BMC EVOLUTIONARY BIOLOGY

Genomic analysis of a key innovation in an experimental Escherichia coli population

(2012) Zachary D. Blount et al.   NATURE

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Striking Natural Diversity in Glandular Trichome Acylsugar Composition Is Shaped by Variation at the Acyltransferase2 Locus in the Wild Tomato Solanum habrochaites

(2012) J. Kim et al.   PLANT PHYSIOLOGY

Acylsucrose-Producing Tomato Plants Forces Bemisia tabaci to Shift Its Preferred Settling and Feeding Site

(2012) Maria Jose Rodríguez-López et al.   PLoS One

Identification of a BAHD acetyltransferase that produces protective acyl sugars in tomato trichomes

(2012) A. L. Schilmiller et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Achieving Diversity in the Face of Constraints: Lessons from Metabolism

(2012) R. Milo et al.   SCIENCE

Natural Enemies Drive Geographic Variation in Plant Defenses

(2012) T. Zust et al.   SCIENCE

Convergent Evolution in Plant Specialized Metabolism

(2011) Eran Pichersky et al.   Annual Review of Plant Biology

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

KNApSAcK Family Databases: Integrated Metabolite–Plant Species Databases for Multifaceted Plant Research

(2011) Farit Mochamad Afendi et al.   PLANT AND CELL PHYSIOLOGY

Trichome-derived O-acyl sugars are a first meal for caterpillars that tags them for predation

(2011) A. Weinhold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

How Many Species Are There on Earth and in the Ocean?

(2011) Camilo Mora et al.   PLOS BIOLOGY

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

Mass spectrometry screening reveals widespread diversity in trichome specialized metabolites of tomato chromosomal substitution lines

(2010) Anthony Schilmiller et al.   PLANT JOURNAL

Virus-induced Gene Silencing (VIGS) in Nicotiana benthamiana and Tomato

(2009) André C. Velásquez et al.   Jove-Journal of Visualized Experiments

Susruta of India, an unrecognized contributor to the history of exercise physiology

(2008) Charles M. Tipton   JOURNAL OF APPLIED PHYSIOLOGY

Harnessing plant trichome biochemistry for the production of useful compounds

(2008) Anthony L. Schilmiller et al.   PLANT JOURNAL

Defining diversity, specialization, and gene specificity in transcriptomes through information theory

(2008) O. Martinez et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA