CpG location and methylation level are crucial factors for the early detection of oral squamous cell carcinoma in brushing samples using bisulfite sequencing of a 13-gene panel

Somatic mutation profiling of hobnail variant of papillary thyroid carcinoma

(2017) Luca Morandi et al.   ENDOCRINE-RELATED CANCER

DNA methylation heterogeneity defines a disease spectrum in Ewing sarcoma

(2017) Nathan C Sheffield et al.   NATURE MEDICINE

Six Serum-Based miRNAs as Potential Diagnostic Biomarkers for Gastric Cancer

(2016) Zebo Huang et al.   CANCER EPIDEMIOLOGY BIOMARKERS & PREVENTION

High-definition CpG methylation of novel genes in gastric carcinogenesis identified by next-generation sequencing

(2016) Jorge L Sepulveda et al.   MODERN PATHOLOGY

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

(2016) Christoph Bock et al.   NATURE BIOTECHNOLOGY

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2016 update

(2016) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

Downregulation of microRNA-193-3p inhibits tumor proliferation migration and chemoresistance in human gastric cancer by regulating PTEN gene

(2016) Bin Jian et al.   TUMOR BIOLOGY

Epigenome-wide analysis of DNA methylation reveals a rectal cancer-specific epigenomic signature

(2016) Veronika Vymetalkova et al.   Epigenomics

BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data

(2015) Ke Hu et al.   BMC BIOINFORMATICS

New DNA Methylation Markers and Global DNA Hypomethylation Are Associated with Oral Cancer Development

(2015) J.-P. Foy et al.   Cancer Prevention Research

DNA methylation profiles and biomarkers of oral squamous cell carcinoma

(2015) Yu-Fen Li et al.   Epigenetics

DNA methylation analysis by bisulfite next-generation sequencing for early detection of oral squamous cell carcinoma and high-grade squamous intraepithelial lesion from oral brushing

(2015) Luca Morandi et al.   JOURNAL OF CRANIO-MAXILLOFACIAL SURGERY

Second primary lung cancers following a diagnosis of primary head and neck cancer

(2015) Gwendolyn H.M.J. Griffioen et al.   LUNG CANCER

ClustVis: a web tool for visualizing clustering of multivariate data using Principal Component Analysis and heatmap

(2015) Tauno Metsalu et al.   NUCLEIC ACIDS RESEARCH

Differential DNA methylation profile of key genes in malignant prostate epithelial cells transformed by inorganic arsenic or cadmium

(2015) Katherine E. Pelch et al.   TOXICOLOGY AND APPLIED PHARMACOLOGY

CpG island methylation profile in non-invasive oral rinse samples is predictive of oral and pharyngeal carcinoma

(2015) Scott M. Langevin et al.   Clinical Epigenetics

Validation of ZAP-70 methylation and its relative significance in predicting outcome in chronic lymphocytic leukemia

(2014) R. Claus et al.   BLOOD

Key tumor suppressor genes inactivated by “greater promoter” methylation and somatic mutations in head and neck cancer

(2014) Rafael Guerrero-Preston et al.   Epigenetics

Recurrent epimutations activate gene body promoters in primary glioblastoma

(2014) R. P. Nagarajan et al.   GENOME RESEARCH

Evaluation of a new grading system for laryngeal squamous intraepithelial lesions-a proposed unified classification

(2014) Nina Gale et al.   HISTOPATHOLOGY

The malignant transformation of oral lichen planus and oral lichenoid lesions

(2014) Sarah G. Fitzpatrick et al.   JOURNAL OF THE AMERICAN DENTAL ASSOCIATION

EDNRB and DCC Salivary Rinse Hypermethylation Has a Similar Performance as Expert Clinical Examination in Discrimination of Oral Cancer/Dysplasia versus Benign Lesions

(2013) J. Schussel et al.   CLINICAL CANCER RESEARCH

LINE1 and Alu repetitive element DNA methylation in tumors and white blood cells from epithelial ovarian cancer patients

(2013) Stacey N. Akers et al.   GYNECOLOGIC ONCOLOGY

Urban legends series: oral leukoplakia

(2013) PG Arduino et al.   ORAL DISEASES

Integrative Genomic Characterization of Oral Squamous Cell Carcinoma Identifies Frequent Somatic Drivers

(2013) C. R. Pickering et al.   Cancer Discovery

Aberrant DNA methylation of tumor-related genes in oral rinse

(2012) Satoshi Nagata et al.   CANCER

Cancer epigenomics: beyond genomics

(2012) Juan Sandoval et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Tissue imprint for molecular mapping of deep surgical margins in patients with head and neck squamous cell carcinoma

(2012) Jong-Lyel Roh et al.   HEAD AND NECK-JOURNAL FOR THE SCIENCES AND SPECIALTIES OF THE HEAD AND NECK

MicroRNA-137 promoter methylation in oral lichen planus and oral squamous cell carcinoma

(2012) Jun Dang et al.   JOURNAL OF ORAL PATHOLOGY & MEDICINE

Biomarkers of oral premalignant epithelial lesions for clinical application

(2012) Rajakishore Mishra   ORAL ONCOLOGY

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

CpG island methylation profiling in human salivary gland adenoid cystic carcinoma

(2011) Achim Bell et al.   CANCER

Analysis of Promoter CpG Island Hypermethylation in Cancer: Location, Location, Location!

(2011) I. J. H. van Vlodrop et al.   CLINICAL CANCER RESEARCH

Hypomethylated CpG around the transcription start site enables TERT expression and HPV16 E6 regulates TERT methylation in cervical cancer cells

(2011) Jing Jiang et al.   GYNECOLOGIC ONCOLOGY

BiQ Analyzer HT: locus-specific analysis of DNA methylation by high-throughput bisulfite sequencing

(2011) Pavlo Lutsik et al.   NUCLEIC ACIDS RESEARCH

BISMA - Fast and accurate bisulfite sequencing data analysis of individual clones from unique and repetitive sequences

(2010) Christian Rohde et al.   BMC BIOINFORMATICS

BS Seeker: precise mapping for bisulfite sequencing

(2010) Pao-Yang Chen et al.   BMC BIOINFORMATICS

Endothelin Receptor Type B Gene Promoter Hypermethylation in Salivary Rinses Is Independently Associated with Risk of Oral Cavity Cancer and Premalignancy

(2010) K. M. Pattani et al.   Cancer Prevention Research

MicroRNA-137 promoter methylation in oral rinses from patients with squamous cell carcinoma of the head and neck is associated with gender and body mass index

(2010) S. M. Langevin et al.   CARCINOGENESIS

Clinical and genetic aspects of Bernard-Soulier syndrome: searching for genotype/phenotype correlations

(2010) A. Savoia et al.   HAEMATOLOGICA

KIF1A and EDNRB are differentially methylated in primary HNSCC and salivary rinses

(2010) Semra Demokan et al.   INTERNATIONAL JOURNAL OF CANCER

Epigenetic profiling reveals etiologically distinct patterns of DNA methylation in head and neck squamous cell carcinoma

(2009) Carmen J. Marsit et al.   CARCINOGENESIS

Exploration of Tumor-Suppressive MicroRNAs Silenced by DNA Hypermethylation in Oral Cancer

(2008) K.-i. Kozaki et al.   CANCER RESEARCH

LINE-1 hypomethylation is inversely associated with microsatellite instability and CpG island methylator phenotype in colorectal cancer

(2008) Shuji Ogino et al.   INTERNATIONAL JOURNAL OF CANCER

Genomic surveys by methylation-sensitive SNP analysis identify sequence-dependent allele-specific DNA methylation

(2008) Kristi Kerkel et al.   NATURE GENETICS

QUMA: quantification tool for methylation analysis

(2008) Y. Kumaki et al.   NUCLEIC ACIDS RESEARCH

Global epidemiology of oral and oropharyngeal cancer

(2008) Saman Warnakulasuriya   ORAL ONCOLOGY