Venomics of Remipede Crustaceans Reveals Novel Peptide Diversity and Illuminates the Venom’s Biological Role

Potent neuroprotection after stroke afforded by a double-knot spider-venom peptide that inhibits acid-sensing ion channel 1a

(2017) Irène R. Chassagnon et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Venom-gland transcriptomics and venom proteomics of the black-back scorpion ( Hadrurus spadix ) reveal detectability challenges and an unexplored realm of animal toxin diversity

(2017) Darin R. Rokyta et al.   TOXICON

Toxin structures as evolutionary tools: Using conserved 3D folds to study the evolution of rapidly evolving peptides

(2016) Eivind A. B. Undheim et al.   BIOESSAYS

Effects of Gene Duplication, Positive Selection, and Shifts in Gene Expression on the Evolution of the Venom Gland Transcriptome in Widow Spiders

(2016) Robert A. Haney et al.   Genome Biology and Evolution

Understanding Biological Roles of Venoms Among the Caenophidia: The Importance of Rear-Fanged Snakes

(2016) Stephen P. Mackessy et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Combined Transcriptomic and Proteomic Analysis of the Posterior Salivary Gland from the Southern Blue-Ringed Octopus and the Southern Sand Octopus

(2016) Brooke L. Whitelaw et al.   JOURNAL OF PROTEOME RESEARCH

Venom Insulins of Cone Snails Diversify Rapidly and Track Prey Taxa

(2016) Helena Safavi-Hemami et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Deep Insight into the Sialome of Rhodnius neglectus, a Vector of Chagas Disease

(2016) Paula Beatriz Santiago et al.   PLoS Neglected Tropical Diseases

Colubrid Venom Composition: An -Omics Perspective

(2016) Inácio Junqueira-de-Azevedo et al.   Toxins

Differential Properties of Venom Peptides and Proteins in Solitary vs. Social Hunting Wasps

(2016) Si Lee et al.   Toxins

The Biochemical Toxin Arsenal from Ant Venoms

(2016) Axel Touchard et al.   Toxins

Insights into the venom composition and evolution of an endoparasitoid wasp by combining proteomic and transcriptomic analyses

(2016) Zhichao Yan et al.   Scientific Reports

Comparative venomics of Psyttalia lounsburyi and P. concolor, two olive fruit fly parasitoids: a hypothetical role for a GH1 β-glucosidase

(2016) Hugo Mathé-Hubert et al.   Scientific Reports

Olfactory pathway in Xibalbanus tulumensis: remipedian hemiellipsoid body as homologue of hexapod mushroom body

(2015) Torben Stemme et al.   CELL AND TISSUE RESEARCH

Characterization of the gila monster (Heloderma suspectum suspectum) venom proteome

(2015) Kristian W. Sanggaard et al.   Journal of Proteomics

Weaponization of a Hormone: Convergent Recruitment of Hyperglycemic Hormone into the Venom of Arthropod Predators

(2015) Eivind A.B. Undheim et al.   STRUCTURE

Peptidome profiling of venom from the social wasp Polybia paulista

(2015) Nathalia Batista Dias et al.   TOXICON

The transcriptome recipe for the venom cocktail of Tityus bahiensis scorpion

(2015) Ursula Castro de Oliveira et al.   TOXICON

Multi-copy venom genes hidden in de novo transcriptome assemblies, a cautionary tale with the snakelocks sea anemone Anemonia sulcata (Pennant, 1977)

(2015) Jason Macrander et al.   TOXICON

Deciphering the Venomic Transcriptome of Killer-Wasp Vespa velutina

(2015) Zhirui Liu et al.   Scientific Reports

Venom Proteins from Parasitoid Wasps and Their Biological Functions

(2015) Sébastien Moreau et al.   Toxins

Centipede Venom: Recent Discoveries and Current State of Knowledge

(2015) Eivind Undheim et al.   Toxins

Whole Transcriptome of the Venom Gland from Urodacus yaschenkoi Scorpion

(2015) Karen Luna-Ramírez et al.   PLoS One

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads

(2014) Y. Xie et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Dramatic expansion of the black widow toxin arsenal uncovered by multi-tissue transcriptomics and venom proteomics

(2014) Robert A Haney et al.   BMC GENOMICS

RNA-seq and high-definition mass spectrometry reveal the complex and divergent venoms of two rear-fanged colubrid snakes

(2014) James J McGivern et al.   BMC GENOMICS

A Polychaete’s Powerful Punch: Venom Gland Transcriptomics of Glycera Reveals a Complex Cocktail of Toxin Homologs

(2014) Björn M. von Reumont et al.   Genome Biology and Evolution

Dual role of the cuttlefish salivary proteome in defense and predation

(2014) Valérie Cornet et al.   Journal of Proteomics

High Conopeptide Diversity in Conus tribblei Revealed Through Analysis of Venom Duct Transcriptome Using Two High-Throughput Sequencing Platforms

(2014) Neda Barghi et al.   MARINE BIOTECHNOLOGY

Clawing through Evolution: Toxin Diversification and Convergence in the Ancient Lineage Chilopoda (Centipedes)

(2014) Eivind A.B. Undheim et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogenomics resolves the timing and pattern of insect evolution

(2014) B. Misof et al.   SCIENCE

Quo Vadis Venomics? A Roadmap to Neglected Venomous Invertebrates

(2014) Bjoern von Reumont et al.   Toxins

De novo Ixodes ricinus salivary gland transcriptome analysis using two next-generation sequencing methodologies

(2013) Alexandra Schwarz et al.   FASEB JOURNAL

Phylogenetic analysis and systematic revision of Remipedia (Nectiopoda) from Bayesian analysis of molecular data

(2013) Mario Hoenemann et al.   JOURNAL OF CRUSTACEAN BIOLOGY

Molecular Phylogeny and Evolution of the Proteins Encoded by Coleoid (Cuttlefish, Octopus, and Squid) Posterior Venom Glands

(2013) Tim Ruder et al.   JOURNAL OF MOLECULAR EVOLUTION

The First Venomous Crustacean Revealed by Transcriptomics and Functional Morphology: Remipede Venom Glands Express a Unique Toxin Cocktail Dominated by Enzymes and a Neurotoxin

(2013) Björn M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Structure-Activity Relationships of the Antimicrobial Peptide Arasin 1 — And Mode of Action Studies of the N-Terminal, Proline-Rich Region

(2013) Victoria S. Paulsen et al.   PLoS One

Spider-Venom Peptides: Structure, Pharmacology, and Potential for Control of Insect Pests

(2012) Glenn F. King et al.   Annual Review of Entomology

The venom-gland transcriptome of the eastern diamondback rattlesnake (Crotalus adamanteus)

(2012) Darin R Rokyta et al.   BMC GENOMICS

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Proteome of Hydra Nematocyst

(2012) Prakash G. Balasubramanian et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Proteomic View of the Venom from the Fire Ant Solenopsis invicta Buren

(2012) José R. A. dos Santos Pinto et al.   JOURNAL OF PROTEOME RESEARCH

Phylotranscriptomics to Bring the Understudied into the Fold: Monophyletic Ostracoda, Fossil Placement, and Pancrustacean Phylogeny

(2012) Todd H. Oakley et al.   MOLECULAR BIOLOGY AND EVOLUTION

B2G-FAR, a species-centered GO annotation repository

(2011) Stefan Götz et al.   BIOINFORMATICS

ProtTest 3: fast selection of best-fit models of protein evolution

(2011) Diego Darriba et al.   BIOINFORMATICS

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Pancrustacean Phylogeny in the Light of New Phylogenomic Data: Support for Remipedia as the Possible Sister Group of Hexapoda

(2011) B. M. von Reumont et al.   MOLECULAR BIOLOGY AND EVOLUTION

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

Global Biodiversity and Phylogenetic Evaluation of Remipedia (Crustacea)

(2011) Marco T. Neiber et al.   PLoS One

A high-throughput venom-gland transcriptome for the Eastern Diamondback Rattlesnake (Crotalus adamanteus) and evidence for pervasive positive selection across toxin classes

(2011) Darin R. Rokyta et al.   TOXICON

Accelerated Profile HMM Searches

(2011) Sean R. Eddy   PLoS Computational Biology

Drosophila Lipophorin Receptors Mediate the Uptake of Neutral Lipids in Oocytes and Imaginal Disc Cells by an Endocytosis-Independent Mechanism

(2011) Esmeralda Parra-Peralbo et al.   PLoS Genetics

Molecular evolution of the crustacean hyperglycemic hormone family in ecdysozoans

(2010) Nicolas Montagné et al.   BMC EVOLUTIONARY BIOLOGY

A Bivalent Tarantula Toxin Activates the Capsaicin Receptor, TRPV1, by Targeting the Outer Pore Domain

(2010) Christopher J. Bohlen et al.   CELL

Insights into the venom composition of the ectoparasitoid waspNasonia vitripennisfrom bioinformatic and proteomic studies

(2010) D. C. de Graaf et al.   INSECT MOLECULAR BIOLOGY

Novel Class of Spider Toxin

(2010) Alexander A. Vassilevski et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Novel venom gene discovery in the platypus

(2010) Camilla M Whittington et al.   GENOME BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

phyloXML: XML for evolutionary biology and comparative genomics

(2009) Mira V Han et al.   BMC BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Tentacles of Venom: Toxic Protein Convergence in the Kingdom Animalia

(2009) B. G. Fry et al.   JOURNAL OF MOLECULAR EVOLUTION

Evolution and diversification of the Toxicofera reptile venom system

(2009) Bryan G. Fry et al.   Journal of Proteomics

Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures

(2009) Steve Hoffmann et al.   PLoS Computational Biology

Drawing explicit phylogenetic networks and their integration into SplitsTree

(2008) Tobias H Kloepper et al.   BMC EVOLUTIONARY BIOLOGY

Transcriptome analysis of Loxosceles laeta (Araneae, Sicariidae) spider venomous gland using expressed sequence tags

(2008) Matheus de F Fernandes-Pedrosa et al.   BMC GENOMICS

Invertebrate trypsins: a review

(2008) Adriana Muhlia-Almazán et al.   JOURNAL OF COMPARATIVE PHYSIOLOGY B-BIOCHEMICAL SYSTEMIC AND ENVIRONMENTAL PHYSIOLOGY

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

A rational nomenclature for naming peptide toxins from spiders and other venomous animals

(2008) Glenn F. King et al.   TOXICON

Arasin 1, a proline–arginine-rich antimicrobial peptide isolated from the spider crab, Hyas araneus

(2007) Klara Stensvåg et al.   DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY