Comparative transcriptome profiling of virulent and non-virulent Trypanosoma cruzi underlines the role of surface proteins during infection

The Trypanosoma cruzi Surface, a Nanoscale Patchwork Quilt

(2017) Juan Mucci et al.   TRENDS IN PARASITOLOGY

Transcriptomic analysis reveals metabolic switches and surface remodeling as key processes for stage transition in Trypanosoma cruzi

(2017) Luisa Berná et al.   PeerJ

g:Profiler—a web server for functional interpretation of gene lists (2016 update)

(2016) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH

Comparative Transcriptome Profiling of Human Foreskin Fibroblasts Infected with the Sylvio and Y Strains of Trypanosoma cruzi

(2016) Genevieve A. Houston-Ludlam et al.   PLoS One

Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection

(2016) Yuan Li et al.   PLoS Pathogens

Arginine methylation of DRBD18 differentially impacts its opposing effects on the trypanosome transcriptome

(2015) K. Lott et al.   NUCLEIC ACIDS RESEARCH

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Glucose metabolism inTrypanosoma cruzi

(2015) Dante A. Maugeri et al.   Essays in Biochemistry

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Regulatory elements involved in the post-transcriptional control of stage-specific gene expression in Trypanosoma cruzi: a review

(2014) Patricia R Araújo et al.   MEMORIAS DO INSTITUTO OSWALDO CRUZ

Quantitative Proteomic and Phosphoproteomic Analysis ofTrypanosoma cruziAmastigogenesis

(2014) Rayner M. L. Queiroz et al.   MOLECULAR & CELLULAR PROTEOMICS

Rab11 Regulates Trafficking of Trans-sialidase to the Plasma Membrane through the Contractile Vacuole Complex of Trypanosoma cruzi

(2014) Sayantanee Niyogi et al.   PLoS Pathogens

A Genome-Wide Tethering Screen Reveals Novel Potential Post-Transcriptional Regulators in Trypanosoma brucei

(2014) Esteban D. Erben et al.   PLoS Pathogens

Molecular characterization of the Trypanosoma cruzi specific RNA binding protein TcRBP40 and its associated mRNAs

(2012) Eloise P. Guerra-Slompo et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Using control genes to correct for unwanted variation in microarray data

(2011) J. A. Gagnon-Bartsch et al.   BIOSTATISTICS

The revised Trypanosoma cruzi subspecific nomenclature: Rationale, epidemiological relevance and research applications

(2011) Bianca Zingales et al.   INFECTION GENETICS AND EVOLUTION

Genomic Analyses, Gene Expression and Antigenic Profile of the Trans-Sialidase Superfamily of Trypanosoma cruzi Reveal an Undetected Level of Complexity

(2011) Leandro M. Freitas et al.   PLoS One

Trypanosoma cruzi as an effective cancer antigen delivery vector

(2011) C. Junqueira et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Shotgun Sequencing Analysis of Trypanosoma cruzi I Sylvio X10/1 and Comparison with T. cruzi VI CL Brener

(2011) Oscar Franzén et al.   PLoS Neglected Tropical Diseases

Genome-wide in silico screen for CCCH-type zinc finger proteins of Trypanosoma brucei, Trypanosoma cruzi and Leishmania major

(2010) Susanne Kramer et al.   BMC GENOMICS

The Pre-mRNA Splicing Machinery of Trypanosomes: Complex or Simplified?

(2010) Arthur Günzl   EUKARYOTIC CELL

Gene ontology analysis for RNA-seq: accounting for selection bias

(2010) Matthew D Young et al.   GENOME BIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The steady-state transcriptome of the four major life-cycle stages of Trypanosoma cruzi

(2009) Todd A Minning et al.   BMC GENOMICS

Chromosome level assembly of the hybrid Trypanosoma cruzi genome

(2009) D Brent Weatherly et al.   BMC GENOMICS

TriTrypDB: a functional genomic resource for the Trypanosomatidae

(2009) Martin Aslett et al.   NUCLEIC ACIDS RESEARCH