Comparative genomics of geographically distant Fusarium fujikuroi isolates revealed two distinct pathotypes correlating with secondary metabolite profiles

Establishment of the Inducible Tet-On System for the Activation of the Silent Trichosetin Gene Cluster in Fusarium fujikuroi

(2017) Slavica Janevska et al.   Toxins

Comparative transcriptome and proteome analysis reveals a global impact of the nitrogen regulators AreA and AreB on secondary metabolism in Fusarium fujikuroi

(2017) Andreas Pfannmüller et al.   PLoS One

Mechanistic Characterisation of Two Sesquiterpene Cyclases from the Plant Pathogenic FungusFusarium fujikuroi

(2016) Immo Burkhardt et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Sound of silence: the beauvericin cluster in Fusarium fujikuroi is controlled by cluster-specific and global regulators mediated by H3K27 modification

(2016) Eva-Maria Niehaus et al.   ENVIRONMENTAL MICROBIOLOGY

Knock-down of the methyltransferase Kmt6 relieves H3K27me3 and results in induction of cryptic and otherwise silent secondary metabolite gene clusters in Fusarium fujikuroi

(2016) Lena Studt et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative “Omics” of theFusarium fujikuroiSpecies Complex Highlights Differences in Genetic Potential and Metabolite Synthesis

(2016) Eva-Maria Niehaus et al.   Genome Biology and Evolution

Genetic variability ofFusarium fujikuroipopulations associated with bakanae of rice in Italy

(2016) M. T. Valente et al.   PLANT PATHOLOGY

Multi-Homologous Recombination-Based Gene Manipulation in the Rice Pathogen Fusarium fujikuroi

(2016) In Sun Hwang et al.   Plant Pathology Journal

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity withinFusarium fujikuroi

(2015) Matteo Chiara et al.   Genome Biology and Evolution

Isolation and Structure Elucidation of Fujikurins A–D: Products of the PKS19 Gene Cluster in Fusarium fujikuroi

(2015) Katharina Walburga von Bargen et al.   JOURNAL OF NATURAL PRODUCTS

A Large-Scale Functional Analysis of Putative Target Genes of Mating-Type Loci Provides Insight into the Regulation of Sexual Development of the Cereal Pathogen Fusarium graminearum

(2015) Hee-Kyoung Kim et al.   PLoS Genetics

Characterization of the fusaric acid gene cluster in Fusarium fujikuroi

(2014) Eva-Maria Niehaus et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Evaluation of bakanae disease progression caused by Fusarium fujikuroi in Oryza sativa L.

(2014) In Sun Hwang et al.   JOURNAL OF MICROBIOLOGY

FgFlbD regulates hyphal differentiation required for sexual and asexual reproduction in the ascomycete fungus Fusarium graminearum

(2014) Hokyoung Son et al.   JOURNAL OF MICROBIOLOGY

Apicidin F: Characterization and Genetic Manipulation of a New Secondary Metabolite Gene Cluster in the Rice Pathogen Fusarium fujikuroi

(2014) Eva-Maria Niehaus et al.   PLoS One

The Fusarium graminearum Genome Reveals More Secondary Metabolite Gene Clusters and Hints of Horizontal Gene Transfer

(2014) Christian M. K. Sieber et al.   PLoS One

Incidence, Molecular Characteristics and Pathogenicity of Gibberella fujikuroi Species Complex Associated with Rice Seeds from Asian Countries

(2014) Young-Ah Jeon et al.   MYCOBIOLOGY

Genetic Manipulation of the Fusarium fujikuroi Fusarin Gene Cluster Yields Insight into the Complex Regulation and Fusarin Biosynthetic Pathway

(2013) Eva-Maria Niehaus et al.   CHEMISTRY & BIOLOGY

WetA Is Required for Conidiogenesis and Conidium Maturation in the Ascomycete Fungus Fusarium graminearum

(2013) Hokyoung Son et al.   EUKARYOTIC CELL

Structure Elucidation and Antimalarial Activity of Apicidin F: An Apicidin-like Compound Produced by Fusarium fujikuroi

(2013) Katharina Walburga von Bargen et al.   JOURNAL OF NATURAL PRODUCTS

The interplay between the GATA transcription factors AreA, the global nitrogen regulator and AreB inFusarium fujikuroi

(2013) C. B. Michielse et al.   MOLECULAR MICROBIOLOGY

Population Structure of the Gibberella fujikuroi Species Complex Associated with Rice and Corn in Korea

(2013) Ji-Hye Kim et al.   Plant Pathology Journal

AbaA Regulates Conidiogenesis in the Ascomycete Fungus Fusarium graminearum

(2013) Hokyoung Son et al.   PLoS One

Development in Aspergillus

(2013) P. Krijgsheld et al.   STUDIES IN MYCOLOGY

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

(2012) Lena Studt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic control of asexual sporulation in filamentous fungi

(2012) Hee-Soo Park et al.   CURRENT OPINION IN MICROBIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

Structure and evolution of the Fusarium mating type locus: New insights from the Gibberella fujikuroi complex

(2011) Simon H. Martin et al.   FUNGAL GENETICS AND BIOLOGY

A New High-Performance Liquid Chromatography–Tandem Mass Spectrometry Method Based on Dispersive Solid Phase Extraction for the Determination of the Mycotoxin Fusarin C in Corn Ears and Processed Corn Samples

(2011) Karin Kleigrewe et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

QuartetS: a fast and accurate algorithm for large-scale orthology detection

(2011) Chenggang Yu et al.   NUCLEIC ACIDS RESEARCH

Large scale purification of B-type fumonisins using centrifugal partition chromatography (CPC)

(2011) Florian Hübner et al.   Mycotoxin Research

Parallelization of the MAFFT multiple sequence alignment program

(2010) Kazutaka Katoh et al.   BIOINFORMATICS

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Aspergillus nidulans asexual development: making the most of cellular modules

(2010) Oier Etxebeste et al.   TRENDS IN MICROBIOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus

(2009) Yasunori Akagi et al.   EUKARYOTIC CELL

Characterization of carotenoid biosynthetic genes in the ascomycete Gibberella zeae

(2009) Jian-Ming Jin et al.   FEMS MICROBIOLOGY LETTERS

Biosynthesis of the red pigment bikaverin inFusarium fujikuroi: genes, their function and regulation

(2009) Philipp Wiemann et al.   MOLECULAR MICROBIOLOGY

Diversity, regulation, and evolution of the gibberellin biosynthetic pathway in fungi compared to plants and bacteria

(2009) Christiane Bömke et al.   PHYTOCHEMISTRY

Starter unit specificity directs genome mining of polyketide synthase pathways in fungi

(2008) Jason M. Crawford et al.   BIOORGANIC CHEMISTRY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

PEDANT covers all complete RefSeq genomes

(2008) M. C. Walter et al.   NUCLEIC ACIDS RESEARCH

Population Structure of Fusarium fujikuroi from California Rice and Water Grass

(2008) L. L. A. Carter et al.   PHYTOPATHOLOGY

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

(2008) G. Aguileta et al.   SYSTEMATIC BIOLOGY