Comparative “Omics” of theFusarium fujikuroiSpecies Complex Highlights Differences in Genetic Potential and Metabolite Synthesis

Mechanistic Characterisation of Two Sesquiterpene Cyclases from the Plant Pathogenic FungusFusarium fujikuroi

(2016) Immo Burkhardt et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Interplay between pathway-specific and global regulation of the fumonisin gene cluster in the rice pathogen Fusarium fujikuroi

(2016) Sarah M. Rösler et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Locating rearrangement events in a phylogeny based on highly fragmented assemblies

(2016) Chunfang Zheng et al.   BMC GENOMICS

Sound of silence: the beauvericin cluster in Fusarium fujikuroi is controlled by cluster-specific and global regulators mediated by H3K27 modification

(2016) Eva-Maria Niehaus et al.   ENVIRONMENTAL MICROBIOLOGY

Two separate key enzymes and two pathway-specific transcription factors are involved in fusaric acid biosynthesis in F usarium fujikuroi

(2016) Lena Studt et al.   ENVIRONMENTAL MICROBIOLOGY

Insights into natural products biosynthesis from analysis of 490 polyketide synthases from Fusarium

(2016) Daren W. Brown et al.   FUNGAL GENETICS AND BIOLOGY

Bacterial terpene cyclases

(2016) Jeroen S. Dickschat   NATURAL PRODUCT REPORTS

Functional characterization of the first filamentous fungal tRNA-isopentenyltransferase and its role in the virulence of Claviceps purpurea

(2016) Janine Hinsch et al.   NEW PHYTOLOGIST

Cytokinin Production by the Rice Blast Fungus Is a Pivotal Requirement for Full Virulence

(2016) Emilie Chanclud et al.   PLoS Pathogens

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

De novobiosynthesis of cytokinins in the biotrophic fungusClaviceps purpurea

(2015) Janine Hinsch et al.   ENVIRONMENTAL MICROBIOLOGY

An update to polyketide synthase and non-ribosomal synthetase genes and nomenclature in Fusarium

(2015) Frederik T. Hansen et al.   FUNGAL GENETICS AND BIOLOGY

Genome Sequencing of Multiple Isolates Highlights Subtelomeric Genomic Diversity withinFusarium fujikuroi

(2015) Matteo Chiara et al.   Genome Biology and Evolution

Isolation and Structure Elucidation of Fujikurins A–D: Products of the PKS19 Gene Cluster in Fusarium fujikuroi

(2015) Katharina Walburga von Bargen et al.   JOURNAL OF NATURAL PRODUCTS

Effector discovery in the fungal wheat pathogenZymoseptoria tritici

(2015) Amir Mirzadi Gohari et al.   MOLECULAR PLANT PATHOLOGY

Identification of a 12-Gene Fusaric Acid Biosynthetic Gene Cluster in Fusarium Species Through Comparative and Functional Genomics

(2015) Daren W. Brown et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Volatile signalling by sesquiterpenes from ectomycorrhizal fungi reprogrammes root architecture

(2015) Franck A. Ditengou et al.   Nature Communications

Individual and combined roles of malonichrome, ferricrocin, and TAFC siderophores in Fusarium graminearum pathogenic and sexual development

(2015) Shinichi Oide et al.   Frontiers in Microbiology

Induced-Fit Mechanism in Class I Terpene Cyclases

(2014) Philipp Baer et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

Characterization of the fusaric acid gene cluster in Fusarium fujikuroi

(2014) Eva-Maria Niehaus et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

New Insights into Mango Malformation Disease Epidemiology Lead to a New Integrated Management Strategy for Subtropical Environments

(2014) Stanley Freeman et al.   PLANT DISEASE

Apicidin F: Characterization and Genetic Manipulation of a New Secondary Metabolite Gene Cluster in the Rice Pathogen Fusarium fujikuroi

(2014) Eva-Maria Niehaus et al.   PLoS One

The Fusarium graminearum Genome Reveals More Secondary Metabolite Gene Clusters and Hints of Horizontal Gene Transfer

(2014) Christian M. K. Sieber et al.   PLoS One

The Genome of the Generalist Plant Pathogen Fusarium avenaceum Is Enriched with Genes Involved in Redox, Signaling and Secondary Metabolism

(2014) Erik Lysøe et al.   PLoS One

FusariumPathogenomics

(2013) Li-Jun Ma et al.   Annual Review of Microbiology

Isolation and Characterisation of a Ferrirhodin Synthetase Gene from the Sugarcane PathogenFusarium sacchari

(2013) Asifa Munawar et al.   CHEMBIOCHEM

Genetic Dissection of Sesquiterpene Biosynthesis byFusarium fujikuroi

(2013) Nelson L. Brock et al.   CHEMBIOCHEM

Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria

(2013) Kerry O’Donnell et al.   FUNGAL GENETICS AND BIOLOGY

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Fusarium oxysporum Effector Six6 Contributes to Virulence and Suppresses I-2-Mediated Cell Death

(2013) F. Gawehns et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

One Fungus, One Name: Defining the Genus Fusarium in a Scientifically Robust Way That Preserves Longstanding Use

(2013) David M. Geiser et al.   PHYTOPATHOLOGY

Analysis of gibberellins as free acids by ultra performance liquid chromatography–tandem mass spectrometry

(2013) Terezie Urbanová et al.   TALANTA

Deciphering the Cryptic Genome: Genome-wide Analyses of the Rice Pathogen Fusarium fujikuroi Reveal Complex Regulation of Secondary Metabolism and Novel Metabolites

(2013) Philipp Wiemann et al.   PLoS Pathogens

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Biosynthesis of Fusarubins Accounts for Pigmentation of Fusarium fujikuroi Perithecia

(2012) Lena Studt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Tools for Botrytis cinerea: New expression vectors make the gray mold fungus more accessible to cell biology approaches

(2012) Julia Schumacher   FUNGAL GENETICS AND BIOLOGY

Identification of gene clusters associated with fusaric acid, fusarin, and perithecial pigment production in Fusarium verticillioides

(2012) Daren W. Brown et al.   FUNGAL GENETICS AND BIOLOGY

The Scent of Bacteria: Headspace Analysis for the Discovery of Natural Products

(2012) Christian A. Citron et al.   JOURNAL OF NATURAL PRODUCTS

The velvet complex governs mycotoxin production and virulence ofFusarium oxysporumon plant and mammalian hosts

(2012) Manuel S. López-Berges et al.   MOLECULAR MICROBIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Regulation of fungal secondary metabolism

(2012) Axel A. Brakhage   NATURE REVIEWS MICROBIOLOGY

The Sfp-Type 4′-Phosphopantetheinyl Transferase Ppt1 of Fusarium fujikuroi Controls Development, Secondary Metabolism and Pathogenicity

(2012) Philipp Wiemann et al.   PLoS One

First fungal genome sequence from Africa: A preliminary analysis

(2012) Brenda D. Wingfield et al.   SOUTH AFRICAN JOURNAL OF SCIENCE

Comparative Pathogenomics Reveals Horizontally Acquired Novel Virulence Genes in Fungi Infecting Cereal Hosts

(2012) Donald M. Gardiner et al.   PLoS Pathogens

Biosynthesis of Sesqui- and Diterpenes by the Gibberellin Producer Fusarium fujikuroi

(2011) Nelson L. Brock et al.   CHEMBIOCHEM

Phylogenomic and functional domain analysis of polyketide synthases in Fusarium

(2011) Daren W. Brown et al.   Fungal Biology

Identification and functional characterization of indole-3-acetamide-mediated IAA biosynthesis in plant-associated Fusarium species

(2011) Elena Tsavkelova et al.   FUNGAL GENETICS AND BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

SignalP 4.0: discriminating signal peptides from transmembrane regions

(2011) Thomas Nordahl Petersen et al.   NATURE METHODS

QuartetS: a fast and accurate algorithm for large-scale orthology detection

(2011) Chenggang Yu et al.   NUCLEIC ACIDS RESEARCH

The main auxin biosynthesis pathway in Arabidopsis

(2011) K. Mashiguchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships

(2010) Kathryn E Bushley et al.   BMC EVOLUTIONARY BIOLOGY

The genomic organization of plant pathogenicity in Fusarium species

(2010) Martijn Rep et al.   CURRENT OPINION IN PLANT BIOLOGY

Functional characterization and manipulation of the apicidin biosynthetic pathway inFusarium semitectum

(2010) Jian-Ming Jin et al.   MOLECULAR MICROBIOLOGY

Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium

(2010) Li-Jun Ma et al.   NATURE

FGDB: revisiting the genome annotation of the plant pathogen Fusarium graminearum

(2010) P. Wong et al.   NUCLEIC ACIDS RESEARCH

Gibberellin biosynthesis and gibberellin oxidase activities in Fusarium sacchari, Fusarium konzum and Fusarium subglutinans strains

(2010) Claudia Troncoso et al.   PHYTOCHEMISTRY

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

TEclass--a tool for automated classification of unknown eukaryotic transposable elements

(2009) G. Abrusan et al.   BIOINFORMATICS

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

SOAP2: an improved ultrafast tool for short read alignment

(2009) R. Li et al.   BIOINFORMATICS

Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus

(2009) Yasunori Akagi et al.   EUKARYOTIC CELL

Biosynthesis and Role in Virulence of the Histone Deacetylase Inhibitor Depudecin fromAlternaria brassicicola

(2009) Wanessa D. Wight et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Conjugates of auxin and cytokinin

(2009) Andrzej Bajguz et al.   PHYTOCHEMISTRY

Diversity, regulation, and evolution of the gibberellin biosynthetic pathway in fungi compared to plants and bacteria

(2009) Christiane Bömke et al.   PHYTOCHEMISTRY

The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion

(2009) Jeffrey J. Coleman et al.   PLoS Genetics

Pitch canker caused byFusarium circinatum– a growing threat to pine plantations and forests worldwide

(2008) M. J. Wingfield et al.   AUSTRALASIAN PLANT PATHOLOGY

Starter unit specificity directs genome mining of polyketide synthase pathways in fungi

(2008) Jason M. Crawford et al.   BIOORGANIC CHEMISTRY

Biosynthesis of the Cyclooligomer Depsipeptide Beauvericin, a Virulence Factor of the Entomopathogenic Fungus Beauveria bassiana

(2008) Yuquan Xu et al.   CHEMISTRY & BIOLOGY

Gene prediction in novel fungal genomes using an ab initio algorithm with unsupervised training

(2008) V. Ter-Hovhannisyan et al.   GENOME RESEARCH

An Improved General Amino Acid Replacement Matrix

(2008) S. Q. Le et al.   MOLECULAR BIOLOGY AND EVOLUTION

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

PEDANT covers all complete RefSeq genomes

(2008) M. C. Walter et al.   NUCLEIC ACIDS RESEARCH

Assessing the Performance of Single-Copy Genes for Recovering Robust Phylogenies

(2008) G. Aguileta et al.   SYSTEMATIC BIOLOGY