A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Enhancing the utilization of host trehalose by fungal trehalase improves the virulence of fungal insecticide

(2015) Guoxiong Peng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Deletion of homologs of the SREBP pathway results in hyper-production of cellulases in Neurospora crassa and Trichoderma reesei

(2015) Morgann C Reilly et al.   Biotechnology for Biofuels

Cellobionic acid utilization: from Neurospora crassa to Saccharomyces cerevisiae

(2015) Xin Li et al.   Biotechnology for Biofuels

Transcription factor ART1 mediates starch hydrolysis and mycotoxin production inFusarium graminearumandF. verticillioides

(2015) Mira Oh et al.   MOLECULAR PLANT PATHOLOGY

Direct Target Network of the Neurospora crassa Plant Cell Wall Deconstruction Regulators CLR-1, CLR-2, and XLR-1

(2015) James P. Craig et al.   mBio

Synergistic and Dose-Controlled Regulation of Cellulase Gene Expression in Penicillium oxalicum

(2015) Zhonghai Li et al.   PLoS Genetics

Closing the loop on the GABA shunt in plants: are GABA metabolism and signaling entwined?

(2015) Simon Michaeli et al.   Frontiers in Plant Science

The bZIP Transcription Factor HAC-1 Is Involved in the Unfolded Protein Response and Is Necessary for Growth on Cellulose in Neurospora crassa

(2015) Alejandro Montenegro-Montero et al.   PLoS One

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species

(2014) S. Priebe et al.   BIOINFORMATICS

Transcriptional comparison of the filamentous fungus Neurospora crassa growing on three major monosaccharides D-glucose, D-xylose and L-arabinose

(2014) Jingen Li et al.   Biotechnology for Biofuels

The proteome and phosphoproteome of Neurospora crassa in response to cellulose, sucrose and carbon starvation

(2014) Yi Xiong et al.   FUNGAL GENETICS AND BIOLOGY

Evidence of a Critical Role for Cellodextrin Transporte 2 (CDT-2) in Both Cellulose and Hemicellulose Degradation and Utilization in Neurospora crassa

(2014) Pengli Cai et al.   PLoS One

A family of starch-active polysaccharide monooxygenases

(2014) V. V. Vu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VIB1, a Link between Glucose Signaling and Carbon Catabolite Repression, Is Essential for Plant Cell Wall Degradation by Neurospora crassa

(2014) Yi Xiong et al.   PLoS Genetics

Functional characterisation of the non-essential protein kinases and phosphatases regulating Aspergillus nidulans hydrolytic enzyme production

(2013) Neil Brown et al.   Biotechnology for Biofuels

Two conidiation-related Zn(II)2Cys6 transcription factor genes in the rice blast fungus

(2013) Hyunjung Chung et al.   FUNGAL GENETICS AND BIOLOGY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The carbohydrate-active enzymes database (CAZy) in 2013

(2013) Vincent Lombard et al.   NUCLEIC ACIDS RESEARCH

MycoCosm portal: gearing up for 1000 fungal genomes

(2013) Igor V. Grigoriev et al.   NUCLEIC ACIDS RESEARCH

Characterising the Role of GABA and Its Metabolism in the Wheat Pathogen Stagonospora nodorum

(2013) Oliver Mead et al.   PLoS One

Long-term strain improvements accumulate mutations in regulatory elements responsible for hyper-production of cellulolytic enzymes

(2013) Guodong Liu et al.   Scientific Reports

Analysis of a conserved cellulase transcriptional regulator reveals inducer-independent production of cellulolytic enzymes inNeurospora crassa

(2013) Samuel T. Coradetti et al.   MicrobiologyOpen

Cellular and molecular responses of Neurospora crassa to non-thermal plasma at atmospheric pressure

(2012) Gyungsoon Park et al.   APPLIED PHYSICS LETTERS

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

A new Zn(II)2Cys6-type transcription factor BglR regulates β-glucosidase expression in Trichoderma reesei

(2012) Mikiko Nitta et al.   FUNGAL GENETICS AND BIOLOGY

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Conserved and essential transcription factors for cellulase gene expression in ascomycete fungi

(2012) S. T. Coradetti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Structural Basis for Substrate Targeting and Catalysis by Fungal Polysaccharide Monooxygenases

(2012) Xin Li et al.   STRUCTURE

Cellobiose Dehydrogenase and a Copper-Dependent Polysaccharide Monooxygenase Potentiate Cellulose Degradation byNeurospora crassa

(2011) Christopher M. Phillips et al.   ACS Chemical Biology

A broader role for AmyR in Aspergillus niger: regulation of the utilisation of d-glucose or d-galactose containing oligo- and polysaccharides

(2011) Patricia A. vanKuyk et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

(2011) F. Sievers et al.   Molecular Systems Biology

The bZIP Transcription Factor MoAP1 Mediates the Oxidative Stress Response and Is Critical for Pathogenicity of the Rice Blast Fungus Magnaporthe oryzae

(2011) Min Guo et al.   PLoS Pathogens

Global gene expression analysis of Aspergillus nidulans reveals metabolic shift and transcription suppression under hypoxia

(2010) Shunsuke Masuo et al.   MOLECULAR GENETICS AND GENOMICS

Cellodextrin Transport in Yeast for Improved Biofuel Production

(2010) J. M. Galazka et al.   SCIENCE

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

New Insights into  -Aminobutyric Acid Catabolism: Evidence for  -Hydroxybutyric Acid and Polyhydroxybutyrate Synthesis in Saccharomyces cerevisiae

(2009) B. Bach et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Transcriptomic comparison of Aspergillus niger growing on two different sugars reveals coordinated regulation of the secretory pathway

(2009) Thomas R Jørgensen et al.   BMC GENOMICS

Characterization and expression analysis of a maltose-utilizing (MAL) cluster in Aspergillus oryzae

(2009) Sachiko Hasegawa et al.   FUNGAL GENETICS AND BIOLOGY

Genome-wide analysis of maltose utilization and regulation in aspergilli

(2009) W. Vongsangnak et al.   MICROBIOLOGY-SGM

Tracking the roots of cellulase hyperproduction by the fungus Trichoderma reesei using massively parallel DNA sequencing

(2009) S. Le Crom et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aspergillus niger genome-wide analysis reveals a large number of novel alpha-glucan acting enzymes with unexpected expression profiles

(2008) Xiao-Lian Yuan et al.   MOLECULAR GENETICS AND GENOMICS