Genomics of parallel adaptation at two timescales in Drosophila

Genomic Patterns of Geographic Differentiation in Drosophila simulans

(2016) A. Sedghifar et al.   GENETICS

Comparative population genomics of latitudinal variation inDrosophila simulansandDrosophila melanogaster

(2016) Heather E. Machado et al.   MOLECULAR ECOLOGY

The Adaptive Significance of Natural Genetic Variation in the DNA Damage Response of Drosophila melanogaster

(2016) Nicolas Svetec et al.   PLoS Genetics

A Genomic Map of the Effects of Linked Selection in Drosophila

(2016) Eyal Elyashiv et al.   PLoS Genetics

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Seasonal variation in life history traits in twoDrosophilaspecies

(2015) E. L. Behrman et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Revisiting classic clines in Drosophila melanogaster in the age of genomics

(2015) Jeffrey R. Adrion et al.   TRENDS IN GENETICS

Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution

(2015) Wilson Leung et al.   G3-Genes Genomes Genetics

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Antisense piRNA amplification, but not piRNA production or nuage assembly, requires the Tudor-domain protein Qin

(2014) Z. Zhang et al.   EMBO JOURNAL

Parallel Geographic Variation in Drosophila melanogaster

(2014) Josie A. Reinhardt et al.   GENETICS

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

(2014) Z.-X. Chen et al.   GENOME RESEARCH

The Relation between Recombination Rate and Patterns of Molecular Evolution and Variation in Drosophila melanogaster

(2014) José L. Campos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Background Selection as Baseline for Nucleotide Variation across the Drosophila Genome

(2014) Josep M. Comeron   PLoS Genetics

Genomic Evidence of Rapid and Stable Adaptive Oscillations over Seasonal Time Scales in Drosophila

(2014) Alan O. Bergland et al.   PLoS Genetics

Death Valley, Drosophila, and the Devonian Toolkit

(2013) Michael H. Dickinson   Annual Review of Entomology

The Molecular Genetics of Insecticide Resistance

(2013) Richard H. ffrench-Constant   GENETICS

Genome of Drosophila suzukii , the Spotted Wing Drosophila

(2013) Joanna C. Chiu et al.   G3-Genes Genomes Genetics

Genomic Variation in Natural Populations of Drosophila melanogaster

(2012) C. H. Langley et al.   GENETICS

Codon Usage Bias and Effective Population Sizes on the X Chromosome versus the Autosomes in Drosophila melanogaster

(2012) Jose L. Campos et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide patterns of latitudinal differentiation among populations ofDrosophila melanogasterfrom North America

(2012) Daniel K. Fabian et al.   MOLECULAR ECOLOGY

Monophyly, divergence times, and evolution of host plant use inferred from a revised phylogeny of the Drosophila repleta species group

(2012) Deodoro C.S.G. Oliveira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Hybrid error correction and de novo assembly of single-molecule sequencing reads

(2012) Sergey Koren et al.   NATURE BIOTECHNOLOGY

Population Genomics of Sub-Saharan Drosophila melanogaster: African Diversity and Non-African Admixture

(2012) John E. Pool et al.   PLoS Genetics

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

PoPoolation2: identifying differentiation between populations using sequencing of pooled DNA samples (Pool-Seq)

(2011) R. Kofler et al.   BIOINFORMATICS

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Heterotypic piRNA Ping-Pong Requires Qin, a Protein with Both E3 Ligase and Tudor Domains

(2011) Zhao Zhang et al.   MOLECULAR CELL

Drosophila Dynein Intermediate Chain Gene, Dic61B, Is Required for Spermatogenesis

(2011) Roshan Fatima   PLoS One

Unique Aspects of Transcription Regulation in Male Germ Cells

(2011) H. White-Cooper et al.   Cold Spring Harbor Perspectives in Biology

Estimating the Parameters of Selection on Nonsynonymous Mutations in Drosophila pseudoobscura and D. miranda

(2010) P. R. Haddrill et al.   GENETICS

Genomic Differentiation Between Temperate and Tropical Australian Populations of Drosophila melanogaster

(2010) B. Kolaczkowski et al.   GENETICS

Molecular population genetics and selection in the glycolytic pathway

(2010) W. F. Eanes   JOURNAL OF EXPERIMENTAL BIOLOGY

The Drosophila melanogaster sperm proteome-II (DmSP-II)

(2010) Elizabeth R. Wasbrough et al.   Journal of Proteomics

Climatic selection of starvation and desiccation resistance in populations of some tropical drosophilids

(2010) R. Parkash et al.   JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH

Determinants of Synonymous and Nonsynonymous Variability in Three Species of Drosophila

(2010) Penelope R. Haddrill et al.   MOLECULAR BIOLOGY AND EVOLUTION

Estimation of the Neutrality Index

(2010) N. Stoletzki et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Nonspecific Lethal Complex Is a Transcriptional Regulator in Drosophila

(2010) Sunil Jayaramaiah Raja et al.   MOLECULAR CELL

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Variant Ionotropic Glutamate Receptors as Chemosensory Receptors in Drosophila

(2009) Richard Benton et al.   CELL

Subunit Composition and Substrate Specificity of a MOF-containing Histone Acetyltransferase Distinct from the Male-specific Lethal (MSL) Complex

(2009) Yong Cai et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

The sequence and de novo assembly of the giant panda genome

(2009) Ruiqiang Li et al.   NATURE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Polytene Chromosomal Maps of 11 Drosophila Species: The Order of Genomic Scaffolds Inferred From Genetic and Physical Maps

(2008) S. W. Schaeffer et al.   GENETICS

Genomic Analysis of Adaptive Differentiation in Drosophila melanogaster

(2008) T. L. Turner et al.   GENETICS

Investigating latitudinal clines for life history and stress resistance traits inDrosophila simulansfrom eastern Australia

(2008) A. L. ARTHUR et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

The hsrω 05241 allele of the noncoding hsrω gene of Drosophila melanogaster is not responsible for male sterility as reported earlier

(2008) Akanksha et al.   JOURNAL OF GENETICS

The McDonald-Kreitman Test and Slightly Deleterious Mutations

(2008) J. Charlesworth et al.   MOLECULAR BIOLOGY AND EVOLUTION