A systems level approach to temporal expression dynamics in Drosophila reveals clusters of long term memory genes

Shifting transcriptional machinery is required for long-term memory maintenance and modification in Drosophila mushroom bodies

(2016) Yukinori Hirano et al.   Nature Communications

Genome-wide identification of neuronal activity-regulated genes in Drosophila

(2016) Xiao Chen et al.   eLife

Differential activation of immune factors in neurons and glia contribute to individual differences in resilience/vulnerability to sleep disruption

(2015) Stephane Dissel et al.   BRAIN BEHAVIOR AND IMMUNITY

Sleep Restores Behavioral Plasticity to Drosophila Mutants

(2015) Stephane Dissel et al.   CURRENT BIOLOGY

Identification of Genes That Promote or Inhibit Olfactory Memory Formation in Drosophila

(2015) Erica Walkinshaw et al.   GENETICS

A Novel Paradigm for Nonassociative Long-Term Memory in Drosophila : Predator-Induced Changes in Oviposition Behavior

(2015) Balint Z. Kacsoh et al.   GENETICS

IMP 2.0: a multi-species functional genomics portal for integration, visualization and prediction of protein functions and networks

(2015) Aaron K. Wong et al.   NUCLEIC ACIDS RESEARCH

Identification of Genes That Promote or Inhibit Olfactory Memory Formation in Drosophila

(2015) Erica Walkinshaw et al.   GENETICS

A Novel Paradigm for Nonassociative Long-Term Memory in Drosophila : Predator-Induced Changes in Oviposition Behavior

(2015) Balint Z. Kacsoh et al.   GENETICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Npas4 Regulates Excitatory-Inhibitory Balance within Neural Circuits through Cell-Type-Specific Gene Programs

(2014) Ivo Spiegel et al.   CELL

Opposing roles of p38 and JNK in a Drosophila model of TDP-43 proteinopathy reveal oxidative stress and innate immunity as pathogenic components of neurodegeneration

(2014) Lihong Zhan et al.   HUMAN MOLECULAR GENETICS

FlyBase: introduction of the Drosophila melanogaster Release 6 reference genome assembly and large-scale migration of genome annotations

(2014) G. dos Santos et al.   NUCLEIC ACIDS RESEARCH

The Drosophila surface glia transcriptome: evolutionary conserved blood-brain barrier processes

(2014) Michael K. DeSalvo et al.   Frontiers in Neuroscience

Architects in neural circuit design: Glia control neuron numbers and connectivity

(2013) Megan M. Corty et al.   JOURNAL OF CELL BIOLOGY

Different Kenyon Cell Populations Drive Learned Approach and Avoidance in Drosophila

(2013) Emmanuel Perisse et al.   NEURON

Dnr1 mutations cause neurodegeneration in Drosophila by activating the innate immune response in the brain

(2013) Y. Cao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

To Favor Survival Under Food Shortage, the Brain Disables Costly Memory

(2013) P.-Y. Placais et al.   SCIENCE

Fruit Flies Medicate Offspring After Seeing Parasites

(2013) B. Z. Kacsoh et al.   SCIENCE

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Identification of Optogenetically Activated Striatal Medium Spiny Neurons by Npas4 Expression

(2012) Asim K. Bepari et al.   PLoS One

Identification of Gene Expression Changes Associated With Long-Term Memory of Courtship Rejection in Drosophila Males

(2012) Ari Winbush et al.   G3-Genes Genomes Genetics

Three Dopamine Pathways Induce Aversive Odor Memories with Different Stability

(2012) Yoshinori Aso et al.   PLoS Genetics

Serine proteases, serine protease inhibitors, and protease-activated receptors: Roles in synaptic function and behavior

(2011) Antoine G. Almonte et al.   BRAIN RESEARCH

G(o) activation is required for both appetitive and aversive memory acquisition in Drosophila

(2011) A. Madalan et al.   LEARNING & MEMORY

Regulation of Primary Response Genes

(2011) Trent Fowler et al.   MOLECULAR CELL

Cytokine signaling through the JAK/STAT pathway is required for long-term memory in Drosophila

(2011) T. Copf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Persistence of Long-Term Memory Storage: New Insights into its Molecular Signatures in the Hippocampus and Related Structures

(2010) Pedro Bekinschtein et al.   NEUROTOXICITY RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Adult Neurogenesis Modulates the Hippocampus-Dependent Period of Associative Fear Memory

(2009) Takashi Kitamura et al.   CELL

A Switch from Cycloheximide-Resistant Consolidated Memory to Cycloheximide-Sensitive Reconsolidation and Extinction in Drosophila

(2009) F. Lagasse et al.   JOURNAL OF NEUROSCIENCE

Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

(2009) Da Wei Huang et al.   Nature Protocols

Immune Activation in Brain Aging and Neurodegeneration: Too Much or Too Little?

(2009) Kurt M. Lucin et al.   NEURON

Activity-Induced Synaptic Capture and Exocytosis of the Neuronal Serine Protease Neurotrypsin

(2008) R. Frischknecht et al.   JOURNAL OF NEUROSCIENCE

Excess protein synthesis in Drosophila Fragile X mutants impairs long-term memory

(2008) François V Bolduc et al.   NATURE NEUROSCIENCE

Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists

(2008) Da Wei Huang et al.   NUCLEIC ACIDS RESEARCH