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Title
Atomistic fingerprint of hyaluronan–CD44 binding
Authors
Keywords
Biochemical simulations, Free energy, Crystal structure, Polymers, CD coreceptors, Arginine, Carbohydrates, Oligomers
Journal
PLoS Computational Biology
Volume 13, Issue 7, Pages e1005663
Publisher
Public Library of Science (PLoS)
Online
2017-07-18
DOI
10.1371/journal.pcbi.1005663
References
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Related references
Note: Only part of the references are listed.- Binding of Hyaluronan to the Native Lymphatic Vessel Endothelial Receptor LYVE-1 Is Critically Dependent on Receptor Clustering and Hyaluronan Organization
- (2016) William Lawrance et al. JOURNAL OF BIOLOGICAL CHEMISTRY
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- Design and syntheses of hyaluronan oligosaccharide conjugates as inhibitors of CD44-Hyaluronan binding
- (2015) Xiaowei Lu et al. GLYCOCONJUGATE JOURNAL
- Molecular mechanism for the action of the anti-CD44 monoclonal antibody MEM-85
- (2015) Jana Škerlová et al. JOURNAL OF STRUCTURAL BIOLOGY
- Revealing the Mechanisms of Protein Disorder and N-Glycosylation in CD44-Hyaluronan Binding Using Molecular Simulation
- (2015) Olgun Guvench Frontiers in Immunology
- Tunable CD44-Specific Cellular Retargeting with Hyaluronic Acid Nanoshells
- (2014) Morten F Ebbesen et al. PHARMACEUTICAL RESEARCH
- Terminal sialic acids on CD44 N-glycans can block hyaluronan binding by forming competing intramolecular contacts with arginine sidechains
- (2014) Christina E. Faller et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit
- (2013) Sander Pronk et al. BIOINFORMATICS
- CD44 Receptor Unfolding Enhances Binding by Freeing Basic Amino Acids to Contact Carbohydrate Ligand
- (2013) Amanda J. Favreau et al. BIOPHYSICAL JOURNAL
- The ‘order-to-disorder’ conformational transition in CD44 protein: An umbrella sampling analysis
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- Comprehensive characterization of the N-glycosylation status of CD44s by use of multiple mass spectrometry-based techniques
- (2012) Huanhuan Han et al. ANALYTICAL AND BIOANALYTICAL CHEMISTRY
- The High and Low Molecular Weight Forms of Hyaluronan Have Distinct Effects on CD44 Clustering
- (2012) Cuixia Yang et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Restricted dynamics of water around a protein–carbohydrate complex: Computer simulation studies
- (2012) Madhurima Jana et al. JOURNAL OF CHEMICAL PHYSICS
- Conformational flexibility of a protein–carbohydrate complex and the structure and ordering of surrounding water
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- Mechanism of Binding Site Conformational Switching in the CD44–Hyaluronan Protein–Carbohydrate Binding Interaction
- (2011) Francis W. Jamison et al. JOURNAL OF MOLECULAR BIOLOGY
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- (2011) Wojciech Plazinski et al. Molecular BioSystems
- Complete reconstruction of an enzyme-inhibitor binding process by molecular dynamics simulations
- (2011) I. Buch et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Analysis of CD44-Hyaluronan Interactions in an Artificial Membrane System
- (2010) Patricia M. Wolny et al. JOURNAL OF BIOLOGICAL CHEMISTRY
- Two-State Conformations in the Hyaluronan-Binding Domain Regulate CD44 Adhesiveness under Flow Condition
- (2010) Shinji Ogino et al. STRUCTURE
- Differential Activation of ERK and Rac Mediates the Proliferative and Anti-proliferative Effects of Hyaluronan and CD44
- (2008) Devashish Kothapalli et al. JOURNAL OF BIOLOGICAL CHEMISTRY
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