Probing eukaryotic cell mechanics via mesoscopic simulations

Biomechanics of red blood cells in human spleen and consequences for physiology and disease

(2016) Igor V. Pivkin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cell biomechanics and its applications in human disease diagnosis

(2015) Yasaman Nematbakhsh et al.   ACTA MECHANICA SINICA

Multiscale impact of nucleotides and cations on the conformational equilibrium, elasticity and rheology of actin filaments and crosslinked networks

(2015) Tamara Carla Bidone et al.   Biomechanics and Modeling in Mechanobiology

Mesoscale modelling of environmentally responsive hydrogels: emerging applications

(2015) Peter D. Yeh et al.   CHEMICAL COMMUNICATIONS

Computational studies on strain transmission from a collagen gel construct to a cell and its internal cytoskeletal filaments

(2015) Yoshihiro Ujihara et al.   COMPUTERS IN BIOLOGY AND MEDICINE

A multiple time stepping algorithm for efficient multiscale modeling of platelets flowing in blood plasma

(2015) Peng Zhang et al.   JOURNAL OF COMPUTATIONAL PHYSICS

Biophysical properties of human breast cancer cells measured using silicon MEMS resonators and atomic force microscopy

(2015) Elise A. Corbin et al.   LAB ON A CHIP

Breakdown of deterministic lateral displacement efficiency for non-dilute suspensions: A numerical study

(2015) R. Vernekar et al.   MEDICAL ENGINEERING & PHYSICS

Numerical simulation of red blood cell distributions in three-dimensional microvascular bifurcations

(2015) Toru Hyakutake et al.   MICROVASCULAR RESEARCH

The ImageJ ecosystem: An open platform for biomedical image analysis

(2015) Johannes Schindelin et al.   MOLECULAR REPRODUCTION AND DEVELOPMENT

A polarizable coarse-grained protein model for dissipative particle dynamics

(2015) Emanuel K. Peter et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Analyses of the cell mechanical damage during microinjection

(2015) Fei Liu et al.   Soft Matter

Inflow/Outflow Boundary Conditions for Particle-Based Blood Flow Simulations: Application to Arterial Bifurcations and Trees

(2015) Kirill Lykov et al.   PLoS Computational Biology

In Situ Mechanical Characterization of the Cell Nucleus by Atomic Force Microscopy

(2014) Haijiao Liu et al.   ACS Nano

Differential nuclear shape dynamics of invasive andnon-invasive breast cancer cells are associated with actin cytoskeleton organization and stability

(2014) Rena Chiotaki et al.   Biochemistry and Cell Biology

Deformability-based red blood cell separation in deterministic lateral displacement devices—A simulation study

(2014) Timm Krüger et al.   Biomicrofluidics

Erythrocyte Membrane Model with Explicit Description of the Lipid Bilayer and the Spectrin Network

(2014) He Li et al.   BIOPHYSICAL JOURNAL

Determinants of Fluidlike Behavior and Effective Viscosity in Cross-Linked Actin Networks

(2014) Taeyoon Kim et al.   BIOPHYSICAL JOURNAL

Microfluidic analysis of red blood cell deformability

(2014) Quan Guo et al.   JOURNAL OF BIOMECHANICS

A polarizable coarse-grained water model for dissipative particle dynamics

(2014) Emanuel K. Peter et al.   JOURNAL OF CHEMICAL PHYSICS

Large scale simulation of red blood cell aggregation in shear flows

(2013) Dong Xu et al.   JOURNAL OF BIOMECHANICS

Hydrodynamic effects on flow-induced polymer translocation through a microfluidic channel

(2013) Xuejin Li et al.   POLYMER

Lipid bilayer and cytoskeletal interactions in a red blood cell

(2013) Z. Peng et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Probing vasoocclusion phenomena in sickle cell anemia via mesoscopic simulations

(2013) H. Lei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Crossover from tumbling to tank-treading-like motion in dense simulated suspensions of red blood cells

(2013) Timm Krüger et al.   Soft Matter

Quantifying the Rheological and Hemodynamic Characteristics of Sickle Cell Anemia

(2012) Huan Lei et al.   BIOPHYSICAL JOURNAL

Two-Component Coarse-Grained Molecular-Dynamics Model for the Human Erythrocyte Membrane

(2012) He Li et al.   BIOPHYSICAL JOURNAL

DPD Simulation of Protein Conformations: From α-Helices to β-Structures

(2012) Aleksey Vishnyakov et al.   Journal of Physical Chemistry Letters

Leukocyte enrichment based on a modified pinched flow fractionation approach

(2012) Claudio Cupelli et al.   Microfluidics and Nanofluidics

Dynamic Mechanisms of Cell Rigidity Sensing: Insights from a Computational Model of Actomyosin Networks

(2012) Carlos Borau et al.   PLoS One

Hydrodynamic stretching of single cells for large population mechanical phenotyping

(2012) D. R. Gossett et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Fluid Mechanics of Cancer and Its Therapy

(2011) Petros Koumoutsakos et al.   Annual Review of Fluid Mechanics

Linear and Nonlinear Rheology of Living Cells

(2011) Philip Kollmannsberger et al.   Annual Review of Materials Research

A three-dimensional random network model of the cytoskeleton and its role in mechanotransduction and nucleus deformation

(2011) Yukai Zeng et al.   Biomechanics and Modeling in Mechanobiology

A microfabricated deformability-based flow cytometer with application to malaria

(2011) Hansen Bow et al.   LAB ON A CHIP

Combined Simulation and Experimental Study of Large Deformation of Red Blood Cells in Microfluidic Systems

(2010) David J. Quinn et al.   ANNALS OF BIOMEDICAL ENGINEERING

Parallel performance of a lattice-Boltzmann/finite element cellular blood flow solver on the IBM Blue Gene/P architecture

(2010) Jonathan R. Clausen et al.   COMPUTER PHYSICS COMMUNICATIONS

Modeling of hemodynamics arising from malaria infection

(2010) Yohsuke Imai et al.   JOURNAL OF BIOMECHANICS

Aspiration of Biological Viscoelastic Drops

(2010) Karine Guevorkian et al.   PHYSICAL REVIEW LETTERS

The cytoskeleton and cancer

(2009) Alan Hall   CANCER AND METASTASIS REVIEWS

Mechanics, malignancy, and metastasis: The force journey of a tumor cell

(2009) Sanjay Kumar et al.   CANCER AND METASTASIS REVIEWS

Effect of red blood cells on platelet aggregation

(2009) I. Pivkin et al.   IEEE ENGINEERING IN MEDICINE AND BIOLOGY MAGAZINE

Shape Transformations of Membrane Vesicles from Amphiphilic Triblock Copolymers: A Dissipative Particle Dynamics Simulation Study

(2009) Xuejin Li et al.   MACROMOLECULES

Computational Analysis of Viscoelastic Properties of Crosslinked Actin Networks

(2009) Taeyoon Kim et al.   PLoS Computational Biology

Single-particle hydrodynamics in DPD: A new formulation

(2008) W. Pan et al.   EPL

Accurate Coarse-Grained Modeling of Red Blood Cells

(2008) Igor V. Pivkin et al.   PHYSICAL REVIEW LETTERS

Measuring molecular rupture forces between single actin filaments and actin-binding proteins

(2008) J. M. Ferrer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Red blood cell aggregation and dissociation in shear flows simulated by lattice Boltzmann method

(2007) Junfeng Zhang et al.   JOURNAL OF BIOMECHANICS