A polarizable coarse-grained protein model for dissipative particle dynamics
Published 2015 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A polarizable coarse-grained protein model for dissipative particle dynamics
Authors
Keywords
-
Journal
PHYSICAL CHEMISTRY CHEMICAL PHYSICS
Volume 17, Issue 37, Pages 24452-24461
Publisher
Royal Society of Chemistry (RSC)
Online
2015-08-26
DOI
10.1039/c5cp03479e
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- A polarizable coarse-grained water model for dissipative particle dynamics
- (2014) Emanuel K. Peter et al. JOURNAL OF CHEMICAL PHYSICS
- RESPAC: Method to Determine Partial Charges in Coarse-Grained Protein Model and Its Application to DNA-Binding Proteins
- (2014) Tsuyoshi Terakawa et al. Journal of Chemical Theory and Computation
- Simulations of Protein Aggregation: Insights from Atomistic and Coarse-Grained Models
- (2014) Alex Morriss-Andrews et al. Journal of Physical Chemistry Letters
- Perspective on the Martini model
- (2013) Siewert J. Marrink et al. CHEMICAL SOCIETY REVIEWS
- Coarse-grain modelling of protein–protein interactions
- (2013) Marc Baaden et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- Electrostatic-Consistent Coarse-Grained Potentials for Molecular Simulations of Proteins
- (2013) Enrico Spiga et al. Journal of Chemical Theory and Computation
- Going Backward: A Flexible Geometric Approach to Reverse Transformation from Coarse Grained to Atomistic Models
- (2013) Tsjerk A. Wassenaar et al. Journal of Chemical Theory and Computation
- Folding Dynamics of the Trp-Cage Miniprotein: Evidence for a Native-Like Intermediate from Combined Time-Resolved Vibrational Spectroscopy and Molecular Dynamics Simulations
- (2013) Heleen Meuzelaar et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Hamiltonian Adaptive Resolution Simulation for Molecular Liquids
- (2013) Raffaello Potestio et al. PHYSICAL REVIEW LETTERS
- Monte Carlo Adaptive Resolution Simulation of Multicomponent Molecular Liquids
- (2013) Raffaello Potestio et al. PHYSICAL REVIEW LETTERS
- Solvating atomic level fine-grained proteins in supra-molecular level coarse-grained water for molecular dynamics simulations
- (2012) Sereina Riniker et al. EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS
- Consistent View of Protein Fluctuations from All-Atom Molecular Dynamics and Coarse-Grained Dynamics with Knowledge-Based Force-Field
- (2012) Michal Jamroz et al. Journal of Chemical Theory and Computation
- DPD Simulation of Protein Conformations: From α-Helices to β-Structures
- (2012) Aleksey Vishnyakov et al. Journal of Physical Chemistry Letters
- Coarse-grained models for protein aggregation
- (2011) Chun Wu et al. CURRENT OPINION IN STRUCTURAL BIOLOGY
- A simple, efficient polarizable coarse-grained water model for molecular dynamics simulations
- (2011) Sereina Riniker et al. JOURNAL OF CHEMICAL PHYSICS
- Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites
- (2011) Andrzej J. Rzepiela et al. PHYSICAL CHEMISTRY CHEMICAL PHYSICS
- Curvature-Dependent Elastic Properties of Liquid-Ordered Domains Result in Inverted Domain Sorting on Uniaxially Compressed Vesicles
- (2011) H. Jelger Risselada et al. PHYSICAL REVIEW LETTERS
- A New Coarse-Grained Model for Water: The Importance of Electrostatic Interactions
- (2010) Zhe Wu et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Recovering physical potentials from a model protein databank
- (2010) J. W. Mullinax et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Multiscale Coarse-Graining of the Protein Energy Landscape
- (2010) Ronald D. Hills et al. PLoS Computational Biology
- Polarizable Water Model for the Coarse-Grained MARTINI Force Field
- (2010) Semen O. Yesylevskyy et al. PLoS Computational Biology
- Comparative atomistic and coarse-grained study of water: What do we lose by coarse-graining?
- (2009) Han Wang et al. EUROPEAN PHYSICAL JOURNAL E
- Computations of Standard Binding Free Energies with Molecular Dynamics Simulations
- (2009) Yuqing Deng et al. JOURNAL OF PHYSICAL CHEMISTRY B
- Structure and Energetics of the Hydrogen-Bonded Backbone in Protein Folding
- (2008) D. Wayne Bolen et al. Annual Review of Biochemistry
- Rate Constant and Reaction Coordinate of Trp-Cage Folding in Explicit Water
- (2008) Jarek Juraszek et al. BIOPHYSICAL JOURNAL
- GROMACS 4: Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation
- (2008) Berk Hess et al. Journal of Chemical Theory and Computation
- Combining a polarizable force-field and a coarse-grained polarizable solvent model: Application to long dynamics simulations of bovine pancreatic trypsin inhibitor
- (2008) Michel Masella et al. JOURNAL OF COMPUTATIONAL CHEMISTRY
- Prediction of Partition Coefficients by Multiscale Hybrid Atomic-Level/Coarse-Grain Simulations
- (2007) Julien Michel et al. JOURNAL OF PHYSICAL CHEMISTRY B
Find the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
SearchAsk a Question. Answer a Question.
Quickly pose questions to the entire community. Debate answers and get clarity on the most important issues facing researchers.
Get Started