Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination

Neurosporachromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me3

(2016) Jonathan M. Galazka et al.   GENOME RESEARCH

Repeat-Associated Fission Yeast-Like Regional Centromeres in the Ascomycetous Budding Yeast Candida tropicalis

(2016) Gautam Chatterjee et al.   PLoS Genetics

A complete toolset for the study of Ustilago bromivora and Brachypodium sp. as a fungal-temperate grass pathosystem

(2016) Franziska Rabe et al.   eLife

Intron retention-dependent gene regulation in Cryptococcus neoformans

(2016) Sara Gonzalez-Hilarion et al.   Scientific Reports

Genus-Wide Comparative Genomics of Malassezia Delineates Its Phylogeny, Physiology, and Niche Adaptation on Human Skin

(2015) Guangxi Wu et al.   PLoS Genetics

Complete Genome Sequence of Sporisorium scitamineum and Biotrophic Interaction Transcriptome with Sugarcane

(2015) Lucas M. Taniguti et al.   PLoS One

SSPACE-LongRead: scaffolding bacterial draft genomes using long read sequence information

(2014) Marten Boetzer et al.   BMC BIOINFORMATICS

Unisexual Reproduction Drives Meiotic Recombination and Phenotypic and Karyotypic Plasticity in Cryptococcus neoformans

(2014) Sheng Sun et al.   PLoS Genetics

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

(2014) Guilhem Janbon et al.   PLoS Genetics

Evolution of fungal sexual reproduction

(2013) Joseph Heitman et al.   MYCOLOGIA

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast Malassezia sympodialis

(2013) A. Gioti et al.   mBio

Living and Thriving on the Skin: Malassezia Genomes Tell the Story

(2013) M. A. Coelho et al.   mBio

Ordered Kinetochore Assembly in the Human-Pathogenic Basidiomycetous Yeast Cryptococcus neoformans

(2013) L. Kozubowski et al.   mBio

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

(2012) Y. H. Grad et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transgene Induced Co-Suppression during Vegetative Growth in Cryptococcus neoformans

(2012) Xuying Wang et al.   PLoS Genetics

Gene Conversion Occurs within the Mating-Type Locus of Cryptococcus neoformans during Sexual Reproduction

(2012) Sheng Sun et al.   PLoS Genetics

Discovery of a Modified Tetrapolar Sexual Cycle in Cryptococcus amylolentus and the Evolution of MAT in the Cryptococcus Species Complex

(2012) Keisha Findley et al.   PLoS Genetics

Sex in Fungi

(2011) Min Ni et al.   Annual Review of Genetics

A scalable, fully automated process for construction of sequence-ready human exome targeted capture libraries

(2011) Sheila Fisher et al.   GENOME BIOLOGY

Sex-induced silencing defends the genome of Cryptococcus neoformans via RNAi

(2010) X. Wang et al.   GENES & DEVELOPMENT

A Tetrad Analysis of the Basidiomycete Fungus Cryptococcus neoformans

(2010) A. Idnurm   GENETICS

Centromeres Convert but Don't Cross

(2010) Paul B. Talbert et al.   PLOS BIOLOGY

Widespread Gene Conversion in Centromere Cores

(2010) Jinghua Shi et al.   PLOS BIOLOGY

The Mating Type Locus (MAT) and Sexual Reproduction of Cryptococcus heveanensis: Insights into the Evolution of Sex and Sex-Determining Chromosomal Regions in Fungi

(2010) Banu Metin et al.   PLoS Genetics

Estimation of the current global burden of cryptococcal meningitis among persons living with HIV/AIDS

(2009) Benjamin J Park et al.   AIDS

Major Evolutionary Transitions in Centromere Complexity

(2009) Harmit S. Malik et al.   CELL

Septins enforce morphogenetic events during sexual reproduction and contribute to virulence ofCryptococcus neoformans

(2009) Lukasz Kozubowski et al.   MOLECULAR MICROBIOLOGY

Transitions in Sexuality: Recapitulation of an Ancestral Tri- and Tetrapolar Mating System inCryptococcus neoformans

(2008) Yen-Ping Hsueh et al.   EUKARYOTIC CELL

ALLPATHS: De novo assembly of whole-genome shotgun microreads

(2008) J. Butler et al.   GENOME RESEARCH

Centromere mitotic recombination in mammalian cells

(2008) Isabel Jaco et al.   JOURNAL OF CELL BIOLOGY

Double-strand breaks associated with repetitive DNA can reshape the genome

(2008) J. L. Argueso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

(2008) Brian J Haas et al.   GENOME BIOLOGY