HLAProfiler utilizes k-mer profiles to improve HLA calling accuracy for rare and common alleles in RNA-seq data

Performance Characteristics and Validation of Next-Generation Sequencing for Human Leucocyte Antigen Typing

(2016) Eric T. Weimer et al.   JOURNAL OF MOLECULAR DIAGNOSTICS

Molecular and pathogenic effects of endoplasmic reticulum aminopeptidases ERAP1 and ERAP2 in MHC-I-associated inflammatory disorders: Towards a unifying view

(2016) José A. López de Castro et al.   MOLECULAR IMMUNOLOGY

Computational genomics tools for dissecting tumour–immune cell interactions

(2016) Hubert Hackl et al.   NATURE REVIEWS GENETICS

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data

(2015) Naoki Nariai et al.   BMC GENOMICS

Development of a high-resolution NGS-based HLA-typing and analysis pipeline

(2015) M. Wittig et al.   NUCLEIC ACIDS RESEARCH

OptiType: precision HLA typing from next-generation sequencing data

(2014) András Szolek et al.   BIOINFORMATICS

Inference of high resolution HLA types using genome-wide RNA or DNA sequencing reads

(2014) Yu Bai et al.   BMC GENOMICS

The IPD and IMGT/HLA database: allele variant databases

(2014) James Robinson et al.   NUCLEIC ACIDS RESEARCH

HLA Diversity in the 1000 Genomes Dataset

(2014) Pierre-Antoine Gourraud et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Transcriptome and genome sequencing uncovers functional variation in humans

(2013) Tuuli Lappalainen et al.   NATURE

HLA Haplotyping from RNA-seq Data Using Hierarchical Read Weighting

(2013) Hyunsung John Kim et al.   PLoS One

HLA Typing from 1000 Genomes Whole Genome and Whole Exome Illumina Data

(2013) Endre Major et al.   PLoS One

Common and well-documented HLA alleles: 2012 update to the CWD catalogue

(2013) S. J. Mack et al.   TISSUE ANTIGENS

Pharmacogenomics of adverse drug reactions

(2013) Ann K Daly   Genome Medicine

GENCODE: The reference human genome annotation for The ENCODE Project

(2012) J. Harrow et al.   GENOME RESEARCH

Old and new HLA associations with ankylosing spondylitis

(2012) R. Díaz-Peña et al.   TISSUE ANTIGENS

HLA DNA typing: past, present, and future

(2012) H. Erlich   TISSUE ANTIGENS

Derivation of HLA types from shotgun sequence datasets

(2012) René L Warren et al.   Genome Medicine

A fast, lock-free approach for efficient parallel counting of occurrences of k-mers

(2011) Guillaume Marçais et al.   BIOINFORMATICS

Human leucocyte antigen typing: techniques and technology, a critical appraisal

(2011) P. P. J. Dunn   International Journal of Immunogenetics

Characterization of 107 Genomic DNA Reference Materials for CYP2D6, CYP2C19, CYP2C9, VKORC1, and UGT1A1

(2010) Victoria M. Pratt et al.   JOURNAL OF MOLECULAR DIAGNOSTICS