Unique DNA methylation signature in HPV-positive head and neck squamous cell carcinomas

Impaired H3K36 methylation defines a subset of head and neck squamous cell carcinomas

(2017) Simon Papillon-Cavanagh et al.   NATURE GENETICS

Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study

(2016) Srikant Ambatipudi et al.   Epigenomics

Simultaneous detection of human papillomavirus integration and c-MYC gene amplification in cervical lesions: an emerging marker for the risk to progression

(2015) Fabrícia Gimenes et al.   ARCHIVES OF GYNECOLOGY AND OBSTETRICS

coMET: visualisation of regional epigenome-wide association scan results and DNA co-methylation patterns

(2015) Tiphaine C Martin et al.   BMC BIOINFORMATICS

Deregulation of SYCP2 predicts early stage human papillomavirus-positive oropharyngeal carcinoma: A prospective whole transcriptome analysis

(2015) Liam Masterson et al.   CANCER SCIENCE

Exposure to aflatoxin B1in uterois associated with DNA methylation in white blood cells of infants in The Gambia

(2015) Hector Hernandez-Vargas et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Comprehensive genomic characterization of head and neck squamous cell carcinomas

(2015)   NATURE

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

HPV testing as a screen for cervical cancer

(2015) A. Goodman   BMJ-British Medical Journal

HPV testing as a screen for cervical cancer

(2015) A. Goodman   BMJ-British Medical Journal

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

(2014) Martin J. Aryee et al.   BIOINFORMATICS

Dynamic imbalance between cancer cell subpopulations induced by Transforming Growth Factor Beta (TGF-β) is associated with a DNA methylome switch

(2014) Marion Martin et al.   BMC GENOMICS

Characterization of HPV and host genome interactions in primary head and neck cancers

(2014) M. Parfenov et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors

(2014) Winston Timp et al.   Genome Medicine

A Poor Prognosis Subtype of HNSCC Is Consistently Observed across Methylome, Transcriptome, and miRNome Analysis

(2013) A. C. Jung et al.   CLINICAL CANCER RESEARCH

Unique DNA Methylation Loci Distinguish Anatomic Site and HPV Status in Head and Neck Squamous Cell Carcinoma

(2013) R. A. Lleras et al.   CLINICAL CANCER RESEARCH

Differences in methylation profiles between HPV-positive and HPV-negative oropharynx squamous cell carcinoma

(2013) Pauline MW van Kempen et al.   Epigenetics

HPV-related methylation signature predicts survival in oropharyngeal squamous cell carcinomas

(2013) Efterpi Kostareli et al.   JOURNAL OF CLINICAL INVESTIGATION

Worldwide Trends in Incidence Rates for Oral Cavity and Oropharyngeal Cancers

(2013) Anil K. Chaturvedi et al.   JOURNAL OF CLINICAL ONCOLOGY

Comprehensive Analysis of DNA Methylation in Head and Neck Squamous Cell Carcinoma Indicates Differences by Survival and Clinicopathologic Characteristics

(2013) Justin A. Colacino et al.   PLoS One

Identification and functional validation of HPV-mediated hypermethylation in head and neck squamous cell carcinoma

(2013) Matthias Lechner et al.   Genome Medicine

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

(2012) Jeffrey T. Leek et al.   BIOINFORMATICS

Identification of an Epigenetic Profile Classifier That Is Associated with Survival in Head and Neck Cancer

(2012) G. M. Poage et al.   CANCER RESEARCH

Global Hypomethylation Identifies Loci Targeted for Hypermethylation in Head and Neck Cancer

(2011) G. M. Poage et al.   CLINICAL CANCER RESEARCH

Increased methylation variation in epigenetic domains across cancer types

(2011) Kasper Daniel Hansen et al.   NATURE GENETICS

Identification of a CpG Island Methylator Phenotype that Defines a Distinct Subgroup of Glioma

(2010) Houtan Noushmehr et al.   CANCER CELL

Nucleosome-Interacting Proteins Regulated by DNA and Histone Methylation

(2010) Till Bartke et al.   CELL

Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities

(2010) Sven Heinz et al.   MOLECULAR CELL

SPRINT: A new parallel framework for R

(2008) Jon Hill et al.   BMC BIOINFORMATICS