Gut microbiota composition is associated with environmental landscape in honey bees

Landscape Scale Study of the Net Effect of Proximity to a Neonicotinoid-Treated Crop on Bee Colony Health

(2017) Nicholas J. Balfour et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic changes associated with the evolutionary transition of an insect gut symbiont into a blood-borne pathogen

(2017) Francisca HID Segers et al.   ISME Journal

Normalization and microbial differential abundance strategies depend upon data characteristics

(2017) Sophie Weiss et al.   Microbiome

Stress and the microbiome: linking glucocorticoids to bacterial community dynamics in wild red squirrels

(2016) Mason R. Stothart et al.   Biology Letters

Large-scale monitoring of effects of clothianidin-dressed oilseed rape seeds on pollinating insects in Northern Germany: effects on honey bees (Apis mellifera)

(2016) Daniel Rolke et al.   ECOTOXICOLOGY

Bartonella apis sp. nov., a honey bee gut symbiont of the class Alphaproteobacteria

(2016) Lucie Kešnerová et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Gut microbial communities of social bees

(2016) Waldan K. Kwong et al.   NATURE REVIEWS MICROBIOLOGY

The Bee Microbiome: Impact on Bee Health and Model for Evolution and Ecology of Host-Microbe Interactions

(2016) Philipp Engel et al.   mBio

Honey Bee Gut Microbiome Is Altered by In-Hive Pesticide Exposures

(2016) Madhavi L. Kakumanu et al.   Frontiers in Microbiology

Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

(2015) Kirsten M Ellegaard et al.   BMC GENOMICS

Neonicotinoid Residues in Wildflowers, a Potential Route of Chronic Exposure for Bees

(2015) Cristina Botías et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Determining the foraging potential of oilseed rape to honey bees using aerial surveys and simulations

(2015) Roger Schürch et al.   JOURNAL OF APICULTURAL RESEARCH

Seed coating with a neonicotinoid insecticide negatively affects wild bees

(2015) Maj Rundlöf et al.   NATURE

Bee declines driven by combined stress from parasites, pesticides, and lack of flowers

(2015) D. Goulson et al.   SCIENCE

The Bacterium Frischella perrara Causes Scab Formation in the Gut of its Honeybee Host

(2015) Philipp Engel et al.   mBio

No apparent correlation between honey bee forager gut microbiota and honey production

(2015) Melissa A. Horton et al.   PeerJ

Genomics of the honey bee microbiome

(2015) Nancy A Moran   Current Opinion in Insect Science

Pesticides and pollinators: a context-sensitive policy approach

(2015) Sainath Suryanarayanan   Current Opinion in Insect Science

Origin and Effect of Alpha 2.2 Acetobacteraceae in Honey Bee Larvae and Description of Parasaccharibacter apium gen. nov., sp. nov.

(2014) Vanessa Corby-Harris et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Insect Gut Bacterial Diversity Determined by Environmental Habitat, Diet, Developmental Stage, and Phylogeny of Host

(2014) Ji-Hyun Yun et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lambda: the local aligner for massive biological data

(2014) Hannes Hauswedell et al.   BIOINFORMATICS

A field study examining the effects of exposure to neonicotinoid seed-treated corn on commercial bumble bee colonies

(2014) G. Christopher Cutler et al.   ECOTOXICOLOGY

Saccharide breakdown and fermentation by the honey bee gut microbiome

(2014) Fredrick J. Lee et al.   ENVIRONMENTAL MICROBIOLOGY

Variation in gut microbial communities and its association with pathogen infection in wild bumble bees (Bombus)

(2014) Daniel P Cariveau et al.   ISME Journal

Waggle Dance Distances as Integrative Indicators of Seasonal Foraging Challenges

(2014) Margaret J. Couvillon et al.   PLoS One

The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs

(2014) Paolo Franchini et al.   PLoS One

The Bacterial Communities Associated with Honey Bee (Apis mellifera) Foragers

(2014) Vanessa Corby-Harris et al.   PLoS One

Genomics and host specialization of honey bee and bumble bee gut symbionts

(2014) W. K. Kwong et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics

(2014) Philipp Engel et al.   PLoS Genetics

LotuS: an efficient and user-friendly OTU processing pipeline

(2014) Falk Hildebrand et al.   Microbiome

Frischella perrara gen. nov., sp. nov., a gammaproteobacterium isolated from the gut of the honeybee, Apis mellifera

(2013) P. Engel et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Early mass-flowering crops mitigate pollinator dilution in late-flowering crops

(2013) Verena Riedinger et al.   LANDSCAPE ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

A Four-Year Field Program Investigating Long-Term Effects of Repeated Exposure of Honey Bee Colonies to Flowering Crops Treated with Thiamethoxam

(2013) Edward Pilling et al.   PLoS One

The Hologenomic Basis of Speciation: Gut Bacteria Cause Hybrid Lethality in the Genus Nasonia

(2013) R. M. Brucker et al.   SCIENCE

A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens)

(2012) Falk Hildebrand et al.   BMC GENOMICS

Gut microbiota instead of host genotype drive the specificity in the interaction of a natural host-parasite system

(2012) Hauke Koch et al.   ECOLOGY LETTERS

Cultivation and characterization of the gut symbionts of honey bees and bumble bees: description of Snodgrassella alvi gen. nov., sp. nov., a member of the family Neisseriaceae of the Betaproteobacteria, and Gilliamella apicola gen. nov., sp. nov., a member of Orbaceae fam. nov., Orbales ord. nov., a sister taxon to the order 'Enterobacteriales' of the Gammaproteobacteria

(2012) W. K. Kwong et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

Pesticide exposure in honey bees results in increased levels of the gut pathogen Nosema

(2012) Jeffery S. Pettis et al.   NATURWISSENSCHAFTEN

Mass-flowering crops enhance wild bee abundance

(2012) Andrea Holzschuh et al.   OECOLOGIA

Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees

(2012) Nancy A. Moran et al.   PLoS One

Independent Studies Using Deep Sequencing Resolve the Same Set of Core Bacterial Species Dominating Gut Communities of Honey Bees

(2012) Zakee L. Sabree et al.   PLoS One

Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut

(2012) Francesca Bottacini et al.   PLoS One

Symbiont-mediated insecticide resistance

(2012) Y. Kikuchi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional diversity within the simple gut microbiota of the honey bee

(2012) P. Engel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Speciation by symbiosis

(2012) Robert M. Brucker et al.   TRENDS IN ECOLOGY & EVOLUTION

Disruption of the Termite Gut Microbiota and Its Prolonged Consequences for Fitness

(2011) Rebeca B. Rosengaus et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Bacterial symbionts as mediators of ecologically important traits of insect hosts

(2011) HEIKE FELDHAAR   ECOLOGICAL ENTOMOLOGY

Bacterial Diversity in Solenopsis invicta and Solenopsis geminata Ant Colonies Characterized by 16S amplicon 454 Pyrosequencing

(2011) Heather D. Ishak et al.   MICROBIAL ECOLOGY

Bacterial Communities in Central European Bumblebees: Low Diversity and High Specificity

(2011) Hauke Koch et al.   MICROBIAL ECOLOGY

How many flowering plants are pollinated by animals?

(2011) Jeff Ollerton et al.   OIKOS

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metaorganisms as the new frontier

(2011) Thomas C.G. Bosch et al.   ZOOLOGY

phangorn: phylogenetic analysis in R

(2010) Klaus Peter Schliep   BIOINFORMATICS

Refined Methodology for the Determination of Neonicotinoid Pesticides and Their Metabolites in Honey Bees and Bee Products by Liquid Chromatography−Tandem Mass Spectrometry (LC-MS/MS)†

(2010) Alaa Kamel   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

A simple and distinctive microbiota associated with honey bees and bumble bees

(2010) VINCENT G. MARTINSON et al.   MOLECULAR ECOLOGY

Adaptation via Symbiosis: Recent Spread of a Drosophila Defensive Symbiont

(2010) J. Jaenike et al.   SCIENCE

Extraordinarily widespread and fantastically complex: comparative biology of endosymbiotic bacterial and fungal mutualists of insects

(2009) Cara M. Gibson et al.   ECOLOGY LETTERS

Genomics and Evolution of Heritable Bacterial Symbionts

(2008) Nancy A. Moran et al.   Annual Review of Genetics

Detection and Identification of a Novel Lactic Acid Bacterial Flora Within the Honey Stomach of the Honeybee Apis mellifera

(2008) Tobias C. Olofsson et al.   CURRENT MICROBIOLOGY

Economic valuation of the vulnerability of world agriculture confronted with pollinator decline

(2008) Nicola Gallai et al.   ECOLOGICAL ECONOMICS

Learning how to live together: genomic insights into prokaryote–animal symbioses

(2008) Andrés Moya et al.   NATURE REVIEWS GENETICS