Extensive intra-phylotype diversity in lactobacilli and bifidobacteria from the honeybee gut

Genomic Encyclopedia of Type Strains of the Genus Bifidobacterium

(2014) Christian Milani et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Saccharide breakdown and fermentation by the honey bee gut microbiome

(2014) Fredrick J. Lee et al.   ENVIRONMENTAL MICROBIOLOGY

Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera

(2014) T. C. Olofsson et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

The Bacterial Communities Associated with Honey Bee (Apis mellifera) Foragers

(2014) Vanessa Corby-Harris et al.   PLoS One

Hidden Diversity in Honey Bee Gut Symbionts Detected by Single-Cell Genomics

(2014) Philipp Engel et al.   PLoS Genetics

CRISPR-Mediated Adaptive Immune Systems in Bacteria and Archaea

(2013) Rotem Sorek et al.   Annual Review of Biochemistry

Specificity between Lactobacilli and Hymenopteran Hosts Is the Exception Rather than the Rule

(2013) Quinn S. McFrederick et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genomic Overview and Biological Functions of Exopolysaccharide Biosynthesis in Bifidobacterium spp.

(2013) Claudio Hidalgo-Cantabrana et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Lactobacillus surface layer proteins: structure, function and applications

(2013) Ulla Hynönen et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Proteins of novel lactic acid bacteria from Apis mellifera mellifera: an insight into the production of known extra-cellular proteins during microbial stress

(2013) Èile Butler et al.   BMC MICROBIOLOGY

Catabolic flexibility of mammalian-associated lactobacilli

(2013) Michelle M O’Donnell et al.   Microbial Cell Factories

A functional glycogen biosynthesis pathway inLactobacillus acidophilus: expression and analysis of theglgoperon

(2013) Yong Jun Goh et al.   MOLECULAR MICROBIOLOGY

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The Transporter Classification Database

(2013) Milton H. Saier et al.   NUCLEIC ACIDS RESEARCH

Population Genetics of Lactobacillus sakei Reveals Three Lineages with Distinct Evolutionary Histories

(2013) Stéphane Chaillou et al.   PLoS One

Microbial Ecology of the Hive and Pollination Landscape: Bacterial Associates from Floral Nectar, the Alimentary Tract and Stored Food of Honey Bees (Apis mellifera)

(2013) Kirk E. Anderson et al.   PLoS One

Characterization of a S-layer protein from Lactobacillus crispatus K313 and the domains responsible for binding to cell wall and adherence to collagen

(2012) Zhilan Sun et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Pyrosequencing analysis of the bacterial communities in the guts of honey bees Apis cerana and Apis mellifera in Korea

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria

(2012) B. Gao et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Identification of a high-molecular-mass Lactobacillus epithelium adhesin (LEA) of Lactobacillus crispatus ST1 that binds to stratified squamous epithelium

(2012) S. M. Edelman et al.   MICROBIOLOGY-SGM

RobiNA: a user-friendly, integrated software solution for RNA-Seq-based transcriptomics

(2012) M. Lohse et al.   NUCLEIC ACIDS RESEARCH

Protein secretion and surface display in Gram-positive bacteria

(2012) O. Schneewind et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Symbionts as Major Modulators of Insect Health: Lactic Acid Bacteria and Honeybees

(2012) Alejandra Vásquez et al.   PLoS One

Distinctive Gut Microbiota of Honey Bees Assessed Using Deep Sampling from Individual Worker Bees

(2012) Nancy A. Moran et al.   PLoS One

Independent Studies Using Deep Sequencing Resolve the Same Set of Core Bacterial Species Dominating Gut Communities of Honey Bees

(2012) Zakee L. Sabree et al.   PLoS One

Bifidobacterium asteroides PRL2011 Genome Analysis Reveals Clues for Colonization of the Insect Gut

(2012) Francesca Bottacini et al.   PLoS One

Bifidobacterial surface-exopolysaccharide facilitates commensal-host interaction through immune modulation and pathogen protection

(2012) S. Fanning et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional diversity within the simple gut microbiota of the honey bee

(2012) P. Engel et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Aerobic Respiration Metabolism in Lactic Acid Bacteria and Uses in Biotechnology

(2012) Martin B. Pedersen et al.   Annual Review of Food Science and Technology

Long-Term Exposure to Antibiotics Has Caused Accumulation of Resistance Determinants in the Gut Microbiota of Honeybees

(2012) B. Tian et al.   mBio

A scientific note on the lactic acid bacterial flora within the honeybee subspecies Apis mellifera (Buckfast), A. m. scutellata, A. m. mellifera, and A. m. monticola

(2011) Tobias C. Olofsson et al.   APIDOLOGIE

Heterologous protein display on the cell surface of lactic acid bacteria mediated by the s-layer protein

(2011) Shumin Hu et al.   Microbial Cell Factories

Evolution and classification of the CRISPR–Cas systems

(2011) Kira S. Makarova et al.   NATURE REVIEWS MICROBIOLOGY

Socially transmitted gut microbiota protect bumble bees against an intestinal parasite

(2011) H. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bees brought to their knees: microbes affecting honey bee health

(2011) Jay D. Evans et al.   TRENDS IN MICROBIOLOGY

The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri

(2011) Steven A. Frese et al.   PLoS Genetics

The Human Gut Microbiome: Ecology and Recent Evolutionary Changes

(2010) Jens Walter et al.   Annual Review of Microbiology

genoPlotR: comparative gene and genome visualization in R

(2010) L. Guy et al.   BIOINFORMATICS

The Newick utilities: high-throughput phylogenetic tree processing in the UNIX shell

(2010) T. Junier et al.   BIOINFORMATICS

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Biofilm formation and dispersal in Gram-positive bacteria

(2010) Tjakko Abee et al.   CURRENT OPINION IN BIOTECHNOLOGY

Genomic Insights into Bifidobacteria

(2010) J.-H. Lee et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

A simple and distinctive microbiota associated with honey bees and bumble bees

(2010) VINCENT G. MARTINSON et al.   MOLECULAR ECOLOGY

GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes

(2010) Amrita Pati et al.   NATURE METHODS

Succession of microbial consortia in the developing infant gut microbiome

(2010) J. E. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Has the Microbiota Played a Critical Role in the Evolution of the Adaptive Immune System?

(2010) Y. K. Lee et al.   SCIENCE

Comparative genomics of Lactobacillus

(2010) Ravi Kant et al.   Microbial Biotechnology

Novel lactic acid bacteria inhibitingPaenibacillus larvaein honey bee larvae

(2009) Eva Forsgren et al.   APIDOLOGIE

DIYA: a bacterial annotation pipeline for any genomics lab

(2009) Andrew C. Stewart et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

A scientific note on the lactic acid bacterial flora in honeybees in the USA – A comparison with bees from Sweden

(2008) Alejandra Vásquez et al.   APIDOLOGIE

Detection and Identification of a Novel Lactic Acid Bacterial Flora Within the Honey Stomach of the Honeybee Apis mellifera

(2008) Tobias C. Olofsson et al.   CURRENT MICROBIOLOGY