Mitochondrial DNA of pre-last glacial maximum red deer from NW Spain suggests a more complex phylogeographical history for the species

Phylogeography of European moose ( Alces alces ) based on contemporary mtDNA data and archaeological records

(2017) Magdalena Niedziałkowska   MAMMALIAN BIOLOGY

Post-glacial colonization of Western Europe brown bears from a cryptic Atlantic refugium out of the Iberian Peninsula

(2017) Ana García-Vázquez et al.   HISTORICAL BIOLOGY

Past climate changes, population dynamics and the origin of Bison in Europe

(2016) Diyendo Massilani et al.   BMC BIOLOGY

Ancient DNA reveals differences in behaviour and sociality between brown bears and extinct cave bears

(2016) Gloria G. Fortes et al.   MOLECULAR ECOLOGY

Iberian red deer: paraphyletic nature at mtDNA but nuclear markers support its genetic identity

(2016) Juan Carranza et al.   Ecology and Evolution

Mitochondrial D-loop phylogeny signals two native Iberian red deer (Cervus elaphus) Lineages genetically different to Western and Eastern European red deer and infers human-mediated translocations

(2013) J. L. Fernández-García et al.   BIODIVERSITY AND CONSERVATION

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Late-glacial recolonization and phylogeography of European red deer (Cervus elaphusL.)

(2013) Meirav Meiri et al.   MOLECULAR ECOLOGY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

PartitionFinder: Combined Selection of Partitioning Schemes and Substitution Models for Phylogenetic Analyses

(2012) R. Lanfear et al.   MOLECULAR BIOLOGY AND EVOLUTION

jModelTest 2: more models, new heuristics and parallel computing

(2012) Diego Darriba et al.   NATURE METHODS

Modern and ancient red fox (Vulpes vulpes) in Europe show an unusual lack of geographical and temporal structuring, and differing responses within the carnivores to historical climatic change

(2011) Amber GF Teacher et al.   BMC EVOLUTIONARY BIOLOGY

Phylogeography, population genetics and conservation of the European red deer Cervus elaphus

(2011) Frank E. ZACHOS et al.   MAMMAL REVIEW

Species-specific responses of Late Quaternary megafauna to climate and humans

(2011) Eline D. Lorenzen et al.   NATURE

TempNet: a method to display statistical parsimony networks for heterochronous DNA sequence data

(2011) Stefan Prost et al.   Methods in Ecology and Evolution

Molecular biogeography of red deer Cervus elaphus from eastern Europe: insights from mitochondrial DNA sequences

(2010) Magdalena Niedziałkowska et al.   ACTA THERIOLOGICA

The complete mitochondrial genome of the domestic red deer (Cervus elaphus) of New Zealand and its phylogenic position within the family Cervidae

(2010) Kenta WADA et al.   ANIMAL SCIENCE JOURNAL

Multiplexed DNA Sequence Capture of Mitochondrial Genomes Using PCR Products

(2010) Tomislav Maricic et al.   PLoS One

Ancient DNA analyses exclude humans as the driving force behind late Pleistocene musk ox (Ovibos moschatus) population dynamics

(2010) P. F. Campos et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Geographical distribution of Pleistocene cold-adapted large mammal faunas in the Iberian Peninsula

(2010) Diego J. Álvarez-Lao et al.   QUATERNARY INTERNATIONAL

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Revising the recent evolutionary history of equids using ancient DNA

(2009) L. Orlando et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Phylogeography of red deer (Cervus elaphus) in Europe

(2008) A. Skog et al.   JOURNAL OF BIOGEOGRAPHY

Surprising migration and population size dynamics in ancient Iberian brown bears (Ursus arctos)

(2008) Cristina E. Valdiosera et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Late Quaternary distribution dynamics and phylogeography of the red deer (Cervus elaphus) in Europe

(2008) R.S. Sommer et al.   QUATERNARY SCIENCE REVIEWS

Phylogeographic insights into cryptic glacial refugia

(2008) J PROVAN et al.   TRENDS IN ECOLOGY & EVOLUTION