Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Published 2017 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Extensive gene content variation in the Brachypodium distachyon pan-genome correlates with population structure
Authors
Keywords
-
Journal
Nature Communications
Volume 8, Issue 1, Pages -
Publisher
Springer Nature
Online
2017-12-13
DOI
10.1038/s41467-017-02292-8
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- The pangenome of hexaploid bread wheat
- (2017) Juan D. Montenegro et al. PLANT JOURNAL
- Extensive Evolution of Cereal Ribosome-Inactivating Proteins Translates into Unique Structural Features, Activation Mechanisms, and Physiological Roles
- (2017) Jeroen De Zaeytijd et al. Toxins
- Analysis of Plant Pan-Genomes and Transcriptomes with GET_HOMOLOGUES-EST, a Clustering Solution for Sequences of the Same Species
- (2017) Bruno Contreras-Moreira et al. Frontiers in Plant Science
- Genome Reduction Uncovers a Large Dispensable Genome and Adaptive Role for Copy Number Variation in Asexually Propagated Solanum tuberosum
- (2016) Michael A. Hardigan et al. PLANT CELL
- The pangenome of an agronomically important crop plant Brassica oleracea
- (2016) Agnieszka A. Golicz et al. Nature Communications
- Population Structure in the Model Grass Is Highly Correlated with Flowering Differences across Broad Geographic Areas
- (2016) Ludmila Tyler et al. Plant Genome
- BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs
- (2015) Felipe A. Simão et al. BIOINFORMATICS
- The development of quick, robust, quantitative phenotypic assays for describing the host–nonhost landscape to stripe rust
- (2015) Andrew M. Dawson et al. Frontiers in Plant Science
- Quartet Inference from SNP Data Under the Coalescent Model
- (2014) Julia Chifman et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Selection and phenotypic characterization of a core collection of Brachypodium distachyon inbred lines
- (2014) Ludmila Tyler et al. BMC PLANT BIOLOGY
- Major haplotype divergence including multiple germin-like protein genes, at the wheat Sr2 adult plant stem rust resistance locus
- (2014) Rohit Mago et al. BMC PLANT BIOLOGY
- Structural variation and genome complexity: is dispensable really dispensable?
- (2014) Fabio Marroni et al. CURRENT OPINION IN PLANT BIOLOGY
- Transcripts of two ent-copalyl diphosphate synthase genes differentially localize in rice plants according to their distinct biological roles
- (2014) Tomonobu Toyomasu et al. JOURNAL OF EXPERIMENTAL BOTANY
- De novo assembly of soybean wild relatives for pan-genome analysis of diversity and agronomic traits
- (2014) Ying-hui Li et al. NATURE BIOTECHNOLOGY
- TEMP: a computational method for analyzing transposable element polymorphism in populations
- (2014) Jiali Zhuang et al. NUCLEIC ACIDS RESEARCH
- Insights into the Maize Pan-Genome and Pan-Transcriptome
- (2014) C. N. Hirsch et al. PLANT CELL
- Genome diversity inBrachypodium distachyon:deep sequencing of highly diverse inbred lines
- (2014) Sean P. Gordon et al. PLANT JOURNAL
- A chromosome-based draft sequence of the hexaploid bread wheat (Triticum aestivum) genome
- (2014) et al. SCIENCE
- GET_HOMOLOGUES, a Versatile Software Package for Scalable and Robust Microbial Pangenome Analysis
- (2013) Bruno Contreras-Moreira et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- The Standing Pool of Genomic Structural Variation in a Natural Population of Mimulus guttatus
- (2013) Lex E. Flagel et al. Genome Biology and Evolution
- Infection of Brachypodium distachyon by Formae Speciales of Puccinia graminis: Early Infection Events and Host-Pathogen Incompatibility
- (2013) Melania Figueroa et al. PLoS One
- QTLs for resistance to the false brome rust Puccinia brachypodii in the model grass Brachypodium distachyon L.
- (2012) Mirko Barbieri et al. GENOME
- Comparative population genomics of maize domestication and improvement
- (2012) Matthew B Hufford et al. NATURE GENETICS
- The genes for gibberellin biosynthesis in wheat
- (2011) Yuanyuan Huang et al. FUNCTIONAL & INTEGRATIVE GENOMICS
- Multiple reference genomes and transcriptomes for Arabidopsis thaliana
- (2011) Xiangchao Gan et al. NATURE
- Whole-genome sequencing of multiple Arabidopsis thaliana populations
- (2011) Jun Cao et al. NATURE GENETICS
- Exploiting the Brachypodium Tool Box in cereal and grass research
- (2011) Luis A. J. Mur et al. NEW PHYTOLOGIST
- Phytozome: a comparative platform for green plant genomics
- (2011) David M. Goodstein et al. NUCLEIC ACIDS RESEARCH
- A multiple resistance locus on chromosome arm 3BS in wheat confers resistance to stem rust (Sr2), leaf rust (Lr27) and powdery mildew
- (2011) R. Mago et al. THEORETICAL AND APPLIED GENETICS
- Coordination of the maize transcriptome by a conserved circadian clock
- (2010) Sadaf Khan et al. BMC PLANT BIOLOGY
- A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice
- (2010) Wen-Hao Yan et al. Molecular Plant
- Genome sequencing and analysis of the model grass Brachypodium distachyon
- (2010) John P. Vogel et al. NATURE
- Genome-wide patterns of genetic variation among elite maize inbred lines
- (2010) Jinsheng Lai et al. NATURE GENETICS
- Megabase Level Sequencing Reveals Contrasted Organization and Evolution Patterns of the Wheat Gene and Transposable Element Spaces
- (2010) Frédéric Choulet et al. PLANT CELL
- DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously
- (2010) X. Wei et al. PLANT PHYSIOLOGY
- High-quality draft assemblies of mammalian genomes from massively parallel sequence data
- (2010) S. Gnerre et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Following Tetraploidy in Maize, a Short Deletion Mechanism Removed Genes Preferentially from One of the Two Homeologs
- (2010) Margaret R. Woodhouse et al. PLOS BIOLOGY
- Development of SSR markers and analysis of diversity in Turkish populations of Brachypodium distachyon
- (2009) John P Vogel et al. BMC PLANT BIOLOGY
- Conservation of telomere protein complexes: shuffling through evolution
- (2009) Benjamin R. Linger et al. CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY
- A First-Generation Haplotype Map of Maize
- (2009) M. A. Gore et al. SCIENCE
- Maize Inbreds Exhibit High Levels of Copy Number Variation (CNV) and Presence/Absence Variation (PAV) in Genome Content
- (2009) Nathan M. Springer et al. PLoS Genetics
- Two Adjacent Nucleotide-Binding Site-Leucine-Rich Repeat Class Genes Are Required to Confer Pikm-Specific Rice Blast Resistance
- (2008) I. Ashikawa et al. GENETICS
- Sequencing of natural strains of Arabidopsis thaliana with short reads
- (2008) S. Ossowski et al. GENOME RESEARCH
- Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
- (2008) M. Freeling et al. GENOME RESEARCH
- Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
- (2008) D. R. Zerbino et al. GENOME RESEARCH
- Deletion in a gene associated with grain size increased yields during rice domestication
- (2008) Ayahiko Shomura et al. NATURE GENETICS
- Genomics of bacteria and archaea: the emerging dynamic view of the prokaryotic world
- (2008) E. V. Koonin et al. NUCLEIC ACIDS RESEARCH
- Two nearly identical terpene synthases catalyze the formation of nerolidol and linalool in snapdragon flowers
- (2008) Dinesh A. Nagegowda et al. PLANT JOURNAL
- The Nuclear Factor Y subunits NF-YB2 and NF-YB3 play additive roles in the promotion of flowering by inductive long-day photoperiods in Arabidopsis
- (2008) Roderick W. Kumimoto et al. PLANTA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search