Translational repression by a miniature inverted-repeat transposable element in the 3′ untranslated region

Retrotransposons as regulators of gene expression

(2016) R. A. Elbarbary et al.   SCIENCE

Combinations of theGhd7,Ghd8andHd1genes largely define the ecogeographical adaptation and yield potential of cultivated rice

(2015) Jia Zhang et al.   NEW PHYTOLOGIST

Boosting CRISPR/Cas9 multiplex editing capability with the endogenous tRNA-processing system

(2015) Kabin Xie et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A transposable element in a NAC gene is associated with drought tolerance in maize seedlings

(2015) Hude Mao et al.   Nature Communications

Epigenetic regulation of transcription and possible functions of mammalian short interspersed elements, SINEs

(2015) Kenji Ichiyanagi   GENES & GENETIC SYSTEMS

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Dodging two bullets with one dsRNA-binding protein

(2014) Reyad A Elbarbary et al.   CELL CYCLE

PKR is activated by cellular dsRNAs during mitosis and acts as a mitotic regulator

(2014) Y. Kim et al.   GENES & DEVELOPMENT

Genome-Wide Prediction of Highly Specific Guide RNA Spacers for CRISPR–Cas9-Mediated Genome Editing in Model Plants and Major Crops

(2014) Kabin Xie et al.   Molecular Plant

Dicer-like 3 produces transposable element-associated 24-nt siRNAs that control agricultural traits in rice

(2014) L. Wei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Targeted mutagenesis in rice using CRISPR-Cas system

(2013) Jin Miao et al.   CELL RESEARCH

STAU1 binding 3' UTR IRAlus complements nuclear retention to protect cells from PKR-mediated translational shutdown

(2013) R. A. Elbarbary et al.   GENES & DEVELOPMENT

Miniature inverted-repeat transposable elements: discovery, distribution, and activity

(2013) Isam Fattash et al.   GENOME

RNA-Guided Genome Editing in Plants Using a CRISPR–Cas System

(2013) Kabin Xie et al.   Molecular Plant

Distinct substrate specificities of Arabidopsis DCL3 and DCL4

(2013) Hideaki Nagano et al.   NUCLEIC ACIDS RESEARCH

P-MITE: a database for plant miniature inverted-repeat transposable elements

(2013) Jiongjiong Chen et al.   NUCLEIC ACIDS RESEARCH

Small Interfering RNA-Mediated Translation Repression Alters Ribosome Sensitivity to Inhibition by Cycloheximide in Chlamydomonas reinhardtii

(2013) X. Ma et al.   PLANT CELL

CACTA-like transposable element in ZmCCT attenuated photoperiod sensitivity and accelerated the postdomestication spread of maize

(2013) Q. Yang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

SINE Retrotransposons Cause Epigenetic Reprogramming of Adjacent Gene Promoters

(2012) M. R. H. Estecio et al.   MOLECULAR CANCER RESEARCH

Long non-coding antisense RNA controls Uchl1 translation through an embedded SINEB2 repeat

(2012) Claudia Carrieri et al.   NATURE

Inverted Alu dsRNA structures do not affect localization but can alter translation efficiency of human mRNAs independent of RNA editing

(2012) Claire R. Capshew et al.   NUCLEIC ACIDS RESEARCH

ZmCCT and the genetic basis of day-length adaptation underlying the postdomestication spread of maize

(2012) H.-Y. Hung et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of Transposon-Derived Small RNAs in the Interplay between Genomes and Parasitic DNA in Rice

(2012) Misuzu Nosaka et al.   PLoS Genetics

3'-UTR-located inverted Alu repeats facilitate mRNA translational repression and stress granule accumulation

(2012) Terry Fitzpatrick et al.   Nucleus

Miniature Inverted-Repeat Transposable Elements (MITEs) Have Been Accumulated through Amplification Bursts and Play Important Roles in Gene Expression and Species Diversity in Oryza sativa

(2011) C. Lu et al.   MOLECULAR BIOLOGY AND EVOLUTION

Roles of DCL4 and DCL3b in rice phased small RNA biogenesis

(2011) Xianwei Song et al.   PLANT JOURNAL

DNA Methylation Mediated by a MicroRNA Pathway

(2010) Liang Wu et al.   MOLECULAR CELL

Unexpected consequences of a sudden and massive transposon amplification on rice gene expression

(2009) Ken Naito et al.   NATURE

The regulated retrotransposon transcriptome of mammalian cells

(2009) Geoffrey J Faulkner et al.   NATURE GENETICS

Kismeth: Analyzer of plant methylation states through bisulfite sequencing

(2008) Eyal Gruntman et al.   BMC BIOINFORMATICS

Alu element-mediated gene silencing

(2008) Ling-Ling Chen et al.   EMBO JOURNAL

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed

(2008) Yukoh Hiei et al.   Nature Protocols

MicroRNA detection by northern blotting using locked nucleic acid probes

(2008) Éva Várallyay et al.   Nature Protocols

Phylogenetic analysis of mRNA polyadenylation sites reveals a role of transposable elements in evolution of the 3′-end of genes

(2008) Ju Youn Lee et al.   NUCLEIC ACIDS RESEARCH

Highly Specific Gene Silencing by Artificial miRNAs in Rice

(2008) Norman Warthmann et al.   PLoS One

Possible involvement of SINEs in mammalian-specific brain formation

(2008) T. Sasaki et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Gene Nomenclature System for Rice

(2008) Susan R. McCouch et al.   Rice