High-throughput RNA structure probing reveals critical folding events during early 60S ribosome assembly in yeast

Insertion of the Biogenesis Factor Rei1 Probes the Ribosomal Tunnel during 60S Maturation

(2016) Basil Johannes Greber et al.   CELL

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes

(2016) Shan Wu et al.   NATURE

Functions of Ribosomal Proteins in Assembly of Eukaryotic Ribosomes In Vivo

(2015) Jesús de la Cruz et al.   Annual Review of Biochemistry

Detection of RNA–Protein Interactions in Living Cells with SHAPE

(2015) Matthew J. Smola et al.   BIOCHEMISTRY

StructureFold: genome-wide RNA secondary structure mapping and reconstructionin vivo

(2015) Yin Tang et al.   BIOINFORMATICS

A network of assembly factors is involved in remodeling rRNA elements during preribosome maturation

(2015) Jochen Baßler et al.   JOURNAL OF CELL BIOLOGY

Nuclear rRNA transcript processing versus internal transcribed spacer secondary structure

(2015) Annette W. Coleman   TRENDS IN GENETICS

A new system for naming ribosomal proteins

(2014) Nenad Ban et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

RiboVision suite for visualization and analysis of ribosomes

(2014) Chad R. Bernier et al.   FARADAY DISCUSSIONS

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains

(2014) M. Gamalinda et al.   GENES & DEVELOPMENT

Ribosome Assembly Factors Pwp1 and Nop12 Are Important for Folding of 5.8S rRNA during Ribosome Biogenesis in Saccharomyces cerevisiae

(2014) J. Talkish et al.   MOLECULAR AND CELLULAR BIOLOGY

Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

(2014) Ralph D. Hector et al.   NUCLEIC ACIDS RESEARCH

Stepwise Splitting of Ribosomal Proteins from Yeast Ribosomes by LiCl

(2014) Kerli Piir et al.   PLoS One

60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle

(2014) Christoph Leidig et al.   Nature Communications

PAR-CLIP data indicate that Nrd1-Nab3-dependent transcription termination regulates expression of hundreds of protein coding genes in yeast

(2014) Shaun Webb et al.   GENOME BIOLOGY

Rrp5 Binding at Multiple Sites Coordinates Pre-rRNA Processing and Assembly

(2013) Simon Lebaron et al.   MOLECULAR CELL

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

(2013) Yoshitaka Matsuo et al.   NATURE

Yeast ribosomal protein L7 and its homologue Rlp7 are simultaneously present at distinct sites on pre-60S ribosomal particles

(2013) Reyes Babiano et al.   NUCLEIC ACIDS RESEARCH

Has1 regulates consecutive maturation and processing steps for assembly of 60S ribosomal subunits

(2013) Jill A. Dembowski et al.   NUCLEIC ACIDS RESEARCH

Studies on the Assembly Characteristics of Large Subunit Ribosomal Proteins in S. cerevisae

(2013) Uli Ohmayer et al.   PLoS One

Identification of the binding site of Rlp7 on assembling 60S ribosomal subunits in Saccharomyces cerevisiae

(2013) J. A. Dembowski et al.   RNA

Safer one-pot synthesis of the 'SHAPE' reagent 1-methyl-7-nitroisatoic anhydride (1m7)

(2013) R. Turner et al.   RNA

Saccharomyces cerevisiae Ribosomal Protein L26 Is Not Essential for Ribosome Assembly and Function

(2012) R. Babiano et al.   MOLECULAR AND CELLULAR BIOLOGY

RNA SHAPE analysis in living cells

(2012) Robert C Spitale et al.   Nature Chemical Biology

Multiple RNA interactions position Mrd1 at the site of the small subunit pseudoknot within the 90S pre-ribosome

(2012) Åsa Segerstolpe et al.   NUCLEIC ACIDS RESEARCH

Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae

(2012) Jason Talkish et al.   NUCLEIC ACIDS RESEARCH

Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing

(2012) Michael Gamalinda et al.   NUCLEIC ACIDS RESEARCH

Rrp5p, Noc1p and Noc2p form a protein module which is part of early large ribosomal subunit precursors in S. cerevisiae

(2012) Thomas Hierlmeier et al.   NUCLEIC ACIDS RESEARCH

Ribosomal proteins L7 and L8 function in concert with six A3 assembly factors to propagate assembly of domains I and II of 25S rRNA in yeast 60S ribosomal subunits

(2012) J. Jakovljevic et al.   RNA

Assembly of Bacterial Ribosomes

(2011) Zahra Shajani et al.   Annual Review of Biochemistry

A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease

(2011) Sander Granneman et al.   EMBO JOURNAL

Assembly ofSaccharomyces cerevisiae60S ribosomal subunits: role of factors required for 27S pre-rRNA processing

(2011) Aarti Sahasranaman et al.   EMBO JOURNAL

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking

(2010) Sander Granneman et al.   EMBO JOURNAL

Ribosomal protein L35 is required for 27SB pre-rRNA processing in Saccharomyces cerevisiae

(2010) Reyes Babiano et al.   NUCLEIC ACIDS RESEARCH

Mechanochemical Removal of Ribosome Biogenesis Factors from Nascent 60S Ribosomal Subunits

(2009) Cornelia Ulbrich et al.   CELL

Mrd1p Is Required for Release of Base-Paired U3 snoRNA within the Preribosomal Complex

(2009) P. Lundkvist et al.   MOLECULAR AND CELLULAR BIOLOGY

The Final Step in 5.8S rRNA Processing Is Cytoplasmic in Saccharomyces cerevisiae

(2009) E. Thomson et al.   MOLECULAR AND CELLULAR BIOLOGY

Mrd1p binds to pre-rRNA early during transcription independent of U3 snoRNA and is required for compaction of the pre-rRNA into small subunit processomes

(2008) A. Segerstolpe et al.   NUCLEIC ACIDS RESEARCH

60S ribosomal subunit assembly dynamics defined by semi-quantitative mass spectrometry of purified complexes

(2008) Alice Lebreton et al.   NUCLEIC ACIDS RESEARCH