Snapshots of pre-rRNA structural flexibility reveal eukaryotic 40S assembly dynamics at nucleotide resolution

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains

(2014) M. Gamalinda et al.   GENES & DEVELOPMENT

Dominant Rio1 kinase/ATPase catalytic mutant induces trapping of late pre-40S biogenesis factors in 80S-like ribosomes

(2014) Sébastien Ferreira-Cerca et al.   NUCLEIC ACIDS RESEARCH

Mod-seq: high-throughput sequencing for chemical probing of RNA structure

(2014) J. Talkish et al.   RNA

60S ribosome biogenesis requires rotation of the 5S ribonucleoprotein particle

(2014) Christoph Leidig et al.   Nature Communications

Final Pre-40S Maturation Depends on the Functional Integrity of the 60S Subunit Ribosomal Protein L3

(2014) Juan J. García-Gómez et al.   PLoS Genetics

Eukaryotic ribosome biogenesis at a glance

(2013) E. Thomson et al.   JOURNAL OF CELL SCIENCE

In Vivo X-Ray Footprinting of Pre-30S Ribosomes Reveals Chaperone-Dependent Remodeling of Late Assembly Intermediates

(2013) Sarah F. Clatterbuck Soper et al.   MOLECULAR CELL

Coupled GTPase and remodelling ATPase activities form a checkpoint for ribosome export

(2013) Yoshitaka Matsuo et al.   NATURE

In vivo genome-wide profiling of RNA secondary structure reveals novel regulatory features

(2013) Yiliang Ding et al.   NATURE

Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo

(2013) Silvi Rouskin et al.   NATURE

Studies on the Assembly Characteristics of Large Subunit Ribosomal Proteins in S. cerevisae

(2013) Uli Ohmayer et al.   PLoS One

A Translation-Like Cycle Is a Quality Control Checkpoint for Maturing 40S Ribosome Subunits

(2012) Bethany S. Strunk et al.   CELL

Fingerprinting Noncanonical and Tertiary RNA Structures by Differential SHAPE Reactivity

(2012) Kady-Ann Steen et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

The Mechanisms of RNA SHAPE Chemistry

(2012) Jennifer L. McGinnis et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

RNA SHAPE analysis in living cells

(2012) Robert C Spitale et al.   Nature Chemical Biology

Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits

(2012) Simon Lebaron et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

ATPase-dependent role of the atypical kinase Rio2 on the evolving pre-40S ribosomal subunit

(2012) Sébastien Ferreira-Cerca et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Kinetic analysis of pre-ribosome structure in vivo

(2012) A. Swiatkowska et al.   RNA

Exploring RNA Structural Codes with SHAPE Chemistry

(2011) Kevin M. Weeks et al.   ACCOUNTS OF CHEMICAL RESEARCH

The kinase activity of human Rio1 is required for final steps of cytoplasmic maturation of 40S subunits

(2011) Barbara Widmann et al.   MOLECULAR BIOLOGY OF THE CELL

Protein-Protein Interactions within Late Pre-40S Ribosomes

(2011) Melody G. Campbell et al.   PLoS One

Multiplexed RNA structure characterization with selective 2'-hydroxyl acylation analyzed by primer extension sequencing (SHAPE-Seq)

(2011) J. B. Lucks et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High throughput structural analysis of yeast ribosomes using hSHAPE

(2011) Jonathan A. Leshin et al.   RNA Biology

Correlating SHAPE signatures with three-dimensional RNA structures

(2011) E. Bindewald et al.   RNA

Ribosome Assembly Factors Prevent Premature Translation Initiation by 40S Assembly Intermediates

(2011) B. S. Strunk et al.   SCIENCE

The Structure of the Eukaryotic Ribosome at 3.0 A Resolution

(2011) A. Ben-Shem et al.   SCIENCE

Cracking pre-40S ribosomal subunit structure by systematic analyses of RNA–protein cross-linking

(2010) Sander Granneman et al.   EMBO JOURNAL

Genome-wide measurement of RNA secondary structure in yeast

(2010) Michael Kertesz et al.   NATURE

FragSeq: transcriptome-wide RNA structure probing using high-throughput sequencing

(2010) Jason G Underwood et al.   NATURE METHODS

The Bowen–Conradi syndrome protein Nep1 (Emg1) has a dual role in eukaryotic ribosome biogenesis, as an essential assembly factor and in the methylation of Ψ1191 in yeast 18S rRNA

(2010) Britta Meyer et al.   NUCLEIC ACIDS RESEARCH

Mechanochemical Removal of Ribosome Biogenesis Factors from Nascent 60S Ribosomal Subunits

(2009) Cornelia Ulbrich et al.   CELL

Immature small ribosomal subunits can engage in translation initiation in Saccharomyces cerevisiae

(2009) Julien Soudet et al.   EMBO JOURNAL

18S rRNA processing requires base pairings of snR30 H/ACA snoRNA to eukaryote-specific 18S sequences

(2009) Eléonore Fayet-Lebaron et al.   EMBO JOURNAL

Time-resolved RNA SHAPE chemistry: quantitative RNA structure analysis in one-second snapshots and at single-nucleotide resolution

(2009) Stefanie A Mortimer et al.   Nature Protocols

Identification of protein binding sites on U3 snoRNA and pre-rRNA by UV cross-linking and high-throughput analysis of cDNAs

(2009) S. Granneman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Loss of rRNA modifications in the decoding center of the ribosome impairs translation and strongly delays pre-rRNA processing

(2009) X.-h. Liang et al.   RNA

The post-transcriptional steps of eukaryotic ribosome biogenesis

(2008) A. K. Henras et al.   CELLULAR AND MOLECULAR LIFE SCIENCES