Platelet function is modified by common sequence variation in megakaryocyte super enhancers

Lineage-Specific Genome Architecture Links Enhancers and Non-coding Disease Variants to Target Gene Promoters

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The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

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The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease

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CTCF: making the right connections

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Jointly characterizing epigenetic dynamics across multiple human cell types

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Large-scale production of megakaryocytes from human pluripotent stem cells by chemically defined forward programming

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C-ing the Genome: A Compendium of Chromosome Conformation Capture Methods to Study Higher-Order Chromatin Organization

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What are super-enhancers?

(2015) Sebastian Pott et al.   NATURE GENETICS

The Reactome pathway Knowledgebase

(2015) Antonio Fabregat et al.   NUCLEIC ACIDS RESEARCH

Molecular liaisons between erythropoiesis and iron metabolism

(2014) L. Kautz et al.   BLOOD

Defining functional DNA elements in the human genome

(2014) M. Kellis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transcriptional diversity during lineage commitment of human blood progenitors

(2014) L. Chen et al.   SCIENCE

Identification of platelet function defects by multi-parameter assessment of thrombus formation

(2014) Susanne M. de Witt et al.   Nature Communications

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis

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Flexible analysis of RNA-seq data using mixed effects models

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Selective Inhibition of Tumor Oncogenes by Disruption of Super-Enhancers

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Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes

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Super-Enhancers in the Control of Cell Identity and Disease

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Maps of open chromatin highlight cell type-restricted patterns of regulatory sequence variation at hematological trait loci

(2013) D. S. Paul et al.   GENOME RESEARCH

SMIM1 underlies the Vel blood group and influences red blood cell traits

(2013) Ana Cvejic et al.   NATURE GENETICS

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

FIDEA: a server for the functional interpretation of differential expression analysis

(2013) Daniel D’Andrea et al.   NUCLEIC ACIDS RESEARCH

Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants

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Uncovering Networks from Genome-Wide Association Studies via Circular Genomic Permutation

(2013) Claudia P. Cabrera et al.   G3-Genes Genomes Genetics

A GWAS sequence variant for platelet volume marks an alternative DNM3 promoter in megakaryocytes near a MEIS1 binding site

(2012) S. T. Nurnberg et al.   BLOOD

The long-range interaction landscape of gene promoters

(2012) Amartya Sanyal et al.   NATURE

BLUEPRINT to decode the epigenetic signature written in blood

(2012) David Adams et al.   NATURE BIOTECHNOLOGY

Ensembl 2013

(2012) Paul Flicek et al.   NUCLEIC ACIDS RESEARCH

Measurement of whole blood thrombus formation using parallel-plate flow chambers – a practical guide

(2012) Roger Van Kruchten et al.   PLATELETS

Systematic Localization of Common Disease-Associated Variation in Regulatory DNA

(2012) M. T. Maurano et al.   SCIENCE

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

(2011) H. Li   BIOINFORMATICS

Mapping and analysis of chromatin state dynamics in nine human cell types

(2011) Jason Ernst et al.   NATURE

The IntAct molecular interaction database in 2012

(2011) S. Kerrien et al.   NUCLEIC ACIDS RESEARCH

Maps of Open Chromatin Guide the Functional Follow-Up of Genome-Wide Association Signals: Application to Hematological Traits

(2011) Dirk S. Paul et al.   PLoS Genetics

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

(2011) Ernest Turro et al.   GENOME BIOLOGY

BigWig and BigBed: enabling browsing of large distributed datasets

(2010) W. J. Kent et al.   BIOINFORMATICS

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

A functional genomics approach reveals novel quantitative trait loci associated with platelet signaling pathways

(2009) C. I. Jones et al.   BLOOD

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Cell–collagen interactions: the use of peptide Toolkits to investigate collagen–receptor interactions

(2008) Richard W. Farndale et al.   BIOCHEMICAL SOCIETY TRANSACTIONS

F-Seq: a feature density estimator for high-throughput sequence tags

(2008) A. P. Boyle et al.   BIOINFORMATICS

Design and analysis of ChIP-seq experiments for DNA-binding proteins

(2008) Peter V Kharchenko et al.   NATURE BIOTECHNOLOGY

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY